Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31930 243 / 2e-81 Mitochondrial glycoprotein family protein (.1) AT1G80720 179 / 5e-57 Mitochondrial glycoprotein family protein (.1) AT1G15870 177 / 2e-55 Mitochondrial glycoprotein family protein (.1) AT3G55605 86 / 4e-20 Mitochondrial glycoprotein family protein (.1) AT5G05990 86 / 6e-20 Mitochondrial glycoprotein family protein (.1) AT2G39795 85 / 7e-20 Mitochondrial glycoprotein family protein (.1) AT5G02050 81 / 3e-18 Mitochondrial glycoprotein family protein (.1) AT4G32605 62 / 1e-11 Mitochondrial glycoprotein family protein (.1) AT2G39790 59 / 2e-10 Mitochondrial glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017126 [exp] 440 / 2e-159 AT4G31930 240 / 3e-80 Mitochondrial glycoprotein family protein (.1) Lus10026060 [exp] 188 / 2e-59 AT1G15870 263 / 4e-89 Mitochondrial glycoprotein family protein (.1) Lus10014351 [exp] 99 / 2e-26 AT1G80720 122 / 1e-36 Mitochondrial glycoprotein family protein (.1) Lus10024351 [exp] 96 / 2e-23 AT5G02050 231 / 6e-76 Mitochondrial glycoprotein family protein (.1) Lus10001015 [exp] 94 / 5e-23 AT3G55605 232 / 1e-76 Mitochondrial glycoprotein family protein (.1) Lus10030157 [exp] 92 / 3e-22 AT3G55605 236 / 6e-78 Mitochondrial glycoprotein family protein (.1) Lus10012653 [exp] 86 / 1e-20 AT5G02050 201 / 2e-65 Mitochondrial glycoprotein family protein (.1) Lus10001017 [exp] 83 / 3e-19 AT3G55605 199 / 2e-64 Mitochondrial glycoprotein family protein (.1) Lus10043448 [exp] 61 / 5e-11 AT4G32605 264 / 1e-89 Mitochondrial glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G021600 [exp] 280 / 6e-96 AT4G31930 259 / 1e-87 Mitochondrial glycoprotein family protein (.1) Potri.001G047600 [exp] 187 / 5e-59 AT1G15870 256 / 2e-86 Mitochondrial glycoprotein family protein (.1) Potri.006G090700 [exp] 89 / 3e-21 AT5G02050 228 / 9e-75 Mitochondrial glycoprotein family protein (.1) Potri.010G198500 [exp] 88 / 7e-21 AT3G55605 210 / 1e-67 Mitochondrial glycoprotein family protein (.1) Potri.010G198600 [exp] 86 / 6e-20 AT2G39795 222 / 1e-72 Mitochondrial glycoprotein family protein (.1) Potri.006G261601 [exp] 82 / 1e-19 AT4G31930 79 / 3e-18 Mitochondrial glycoprotein family protein (.1) Potri.016G102200 [exp] 82 / 7e-19 AT5G02050 216 / 4e-70 Mitochondrial glycoprotein family protein (.1) Potri.010G244500 [exp] 69 / 8e-14 AT4G32605 242 / 3e-81 Mitochondrial glycoprotein family protein (.1) Potri.008G015600 [exp] 65 / 2e-12 AT4G32605 262 / 2e-88 Mitochondrial glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02330 [flax] [poplar] MAM33 Mitochondrial glycoprotein
Representative CDS sequence Show only first row Show all	>Lus10018327 pacid=23179380 polypeptide=Lus10018327 locus=Lus10018327.g ID=Lus10018327.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCCTTATTCCGAACGGCACAGAGGTCTCTAACTTCTCATCGAACTTCTACTCTACATCTAATAAAGCCGGCCGTCGCTTCTTCTTTCTTCC AGTCCCGAGCTGCCATATCGCTTTCCGAAGCCAACATTCTCAGAATCATCGACAACGAGGTCGATTACCAGTCCGAATACGCCCCTCCGCACCAGCCTGC GGAGAAATTCGATTCGTTCGCGGTGCAAGACAAGCCAGGCCAGCAATGGATGACGATGACGAGGAGATTCGCTGACGCTGAAGACGTTAAAATCGAAGCC ATGATGTTTGATGGCTACGAACTTGTACCGAAGCCCGGAGAAGATAGCTCCGGGGAGAACGTGCGTCTTCATATCAGCTTACTCGTGGACATCTCCAAAG TCGATGATGATGGTGGAAACAGCACGTTGGAGTTCGTTTGCTCAGCGTGGCCGGATCGTTTGGAGATTCAGAAAGTATATTTGCTTCGTGGAGATAAGTT GCTTGGGAGGCCTTACATGGGCCCTCACTTCCGGAGTTTGAGTCGCGAGCTTCAGAAAGGATTGCGCAGCTTCTTGGAGGAAAGAGGGGTAAATGATAAG CTTTCGTTTTTCTTGCATGAGTACATCTCGAACAAAGATAGGATTGAACTTATTCGATGGTTGGAAAGGGTGAAATCGTTTGTTGAAAACTAG
AA sequence Show only first row Show all	>Lus10018327 pacid=23179380 polypeptide=Lus10018327 locus=Lus10018327.g ID=Lus10018327.BGIv1.0 annot-version=v1.0 MASALFRTAQRSLTSHRTSTLHLIKPAVASSFFQSRAAISLSEANILRIIDNEVDYQSEYAPPHQPAEKFDSFAVQDKPGQQWMTMTRRFADAEDVKIEA MMFDGYELVPKPGEDSSGENVRLHISLLVDISKVDDDGGNSTLEFVCSAWPDRLEIQKVYLLRGDKLLGRPYMGPHFRSLSRELQKGLRSFLEERGVNDK LSFFLHEYISNKDRIELIRWLERVKSFVEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31930			Mitochondrial glycoprotein fam...		Lus10018327 [exp]	0	1
AT1G23100			GroES-like family protein (.1)		Lus10036055 [exp]	6.9	0.8541
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10015078 [exp]	82.6	0.7914
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10038216 [exp]	92.3	0.7835
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011902 [exp]	101.4	0.7787

Compare expression of checked genes

Lus10018327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.