Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25160 92 / 6e-23 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G10970 92 / 1e-22 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G80730 71 / 3e-15 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT1G66140 70 / 1e-14 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT1G24625 69 / 2e-14 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT5G57520 64 / 4e-13 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT1G67030 62 / 3e-12 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT5G14010 61 / 7e-12 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G58070 60 / 3e-11 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G01860 58 / 1e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017125 [exp] 244 / 3e-83 AT5G10970 95 / 4e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10013243 [exp] 70 / 2e-14 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10030764 [exp] 70 / 2e-14 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10010388 [exp] 69 / 2e-14 AT1G24625 88 / 4e-21 zinc finger protein 7 (.1) Lus10003681 [exp] 67 / 6e-14 AT1G24625 112 / 9e-31 zinc finger protein 7 (.1) Lus10014350 [exp] 68 / 7e-14 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10028997 [exp] 66 / 1e-13 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1) Lus10025471 [exp] 64 / 3e-13 AT5G57520 92 / 3e-24 zinc finger protein 2 (.1) Lus10006960 [exp] 61 / 6e-12 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G021400 [exp] 83 / 2e-19 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G180600 [exp] 82 / 6e-19 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G261700 [exp] 81 / 9e-19 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G047500 [exp] 74 / 4e-16 AT5G10970 143 / 5e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.017G134800 [exp] 70 / 1e-14 AT1G66140 165 / 3e-50 zinc finger protein 4 (.1) Potri.010G102700 [exp] 70 / 1e-14 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1) Potri.004G084100 [exp] 69 / 2e-14 AT1G66140 164 / 6e-50 zinc finger protein 4 (.1) Potri.008G138000 [exp] 69 / 2e-14 AT1G66140 155 / 2e-46 zinc finger protein 4 (.1) Potri.004G097900 [exp] 64 / 6e-13 AT1G67030 100 / 2e-26 zinc finger protein 6 (.1) Potri.002G199200 [exp] 63 / 1e-12 AT1G67030 71 / 2e-15 zinc finger protein 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018328 pacid=23179275 polypeptide=Lus10018328 locus=Lus10018328.g ID=Lus10018328.BGIv1.0 annot-version=v1.0 ATGGAATCAGTCAATGATCACCAGCCAACTAATAAGAAGCGCAAGGAAGAACTCAACCTCATCGACTGCTTGGACGCTGGTACTAGTTCCCAGGAGAAGG CAAAGTTCAGTTGTAACTACTGCAACAGGGAATTCTACAGCTCACAAGCACTCGGGGGGCATCAGAATGCTCACAAGCGAGAGCGGTGTCTCGCCAAAAG AGGCCTTATGATGATCACCAGGAGGGTGAATACTACGGCTGCTGCTTCTTACTATCATCCTTCCACTTTTCACAATTCTTGGCACCGTTATGGCACATCT CCTTTTGCAGTCCAGCCCCACTCTCTTCATCATAACGGGCCTCCTCCTATTTCGTCGAGCAGTAGGCTACCTGCTGCTGCTGCTAGTCACCAAGGGCCAC TACAGCCTCGTGGGTTCGGAATGCTTACCAATTCTATTATGCCACTTCAACCCCCACCACCACCACCATCACCGCCGCTGTCAACAACAACAAGCAGCCA GTATAGTTCGCAGAAGCTTGATTTAGCACTCAGGCTCTAG
AA sequence Show only first row Show all	>Lus10018328 pacid=23179275 polypeptide=Lus10018328 locus=Lus10018328.g ID=Lus10018328.BGIv1.0 annot-version=v1.0 MESVNDHQPTNKKRKEELNLIDCLDAGTSSQEKAKFSCNYCNREFYSSQALGGHQNAHKRERCLAKRGLMMITRRVNTTAAASYYHPSTFHNSWHRYGTS PFAVQPHSLHHNGPPPISSSSRLPAAAASHQGPLQPRGFGMLTNSIMPLQPPPPPPSPPLSTTTSSQYSSQKLDLALRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018328 [exp]	0	1
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014741 [exp]	1.7	0.8239
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	5.5	0.7761
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040128 [exp]	7.1	0.8142
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040127 [exp]	9.0	0.8127
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10005201 [exp]	13.1	0.7692
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10035329 [exp]	13.7	0.7632
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	14.5	0.7754
AT5G51040			unknown protein		Lus10043024 [exp]	16.5	0.7723
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	16.6	0.7812
AT4G10270			Wound-responsive family protei...		Lus10033729 [exp]	16.9	0.7412

Compare expression of checked genes

Lus10018328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.