Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19810 265 / 2e-85 ChiC class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19800 251 / 3e-80 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19820 245 / 6e-78 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19750 232 / 6e-73 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19720 224 / 8e-70 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19760 223 / 2e-69 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19770 187 / 4e-57 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19730 172 / 2e-50 Glycosyl hydrolase superfamily protein (.1) AT4G19740 122 / 1e-32 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017124 [exp] 647 / 0 AT4G19810 260 / 9e-84 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10019060 [exp] 256 / 3e-79 AT4G19810 437 / 1e-149 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036311 [exp] 246 / 3e-78 AT4G19810 377 / 5e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036306 [exp] 225 / 4e-70 AT4G19810 397 / 6e-138 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036315 [exp] 175 / 6e-51 AT4G19820 253 / 3e-81 Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10019061 [exp] 176 / 1e-48 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10036310 [exp] 160 / 2e-46 AT4G19810 277 / 3e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10040021 [exp] 155 / 3e-42 AT4G19810 278 / 5e-89 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10024081 [exp] 154 / 5e-41 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G261800 [exp] 401 / 2e-137 AT4G19810 286 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G262001 [exp] 395 / 5e-136 AT4G19810 283 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G112000 [exp] 346 / 2e-117 AT4G19810 284 / 3e-93 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G112100 [exp] 342 / 9e-116 AT4G19810 279 / 3e-91 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G188300 [exp] 255 / 6e-82 AT4G19810 379 / 2e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G188400 [exp] 254 / 1e-81 AT4G19810 477 / 2e-169 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G111700 [exp] 187 / 9e-53 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111900 [exp] 184 / 2e-51 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111800 [exp] 179 / 5e-50 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111600 [exp] 164 / 1e-44 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10018329 pacid=23179402 polypeptide=Lus10018329 locus=Lus10018329.g ID=Lus10018329.BGIv1.0 annot-version=v1.0 ATGGCATCCTCCACACTAACGTTTCCAATCCTTCTTATCTTCTTCTTCTTCACTCTCTTCAATGCCATGATCAACACCAATTCCCAACCCATGATCTCTC CAACACCAAACCCAACTCCTTCCCCTGCTCCACCGGCGCCGGCGGCGGACATAATCAGAGCAGCTTACTGGGAATCGTTCTCCGACTTCCCGGCCTCTTC AATCAACACCTCCCACTTCACCCACGTCTACTACGCTTTCATCCTGCTCAAACCCACCACATTCGAGCTCAACATCACCGAATCGGACAAAATCAAACTC CCCCAATTCACATCAGCCCTCTCCGGAAAAAACCCTCCGGCGAAAACCCTCCTCTCCATCGGAGGCGCTTTCCCGGTCTCCATCGCCCAGGTGTTCGCCG AAATGGCCAAGTCGCGCAAATCTCGCGTCGTGTTTATCCTGTCGGCAATTCGGACGGCGAGAAAATACGGATTCGACGGCCTCGACATTGACTGGGAATA CCCCGTTGACCCCGTTGAGATGCGAAACTACGCCGTGTTGCTCAGGGAATGCCGGCAGGCTGTGGATTTCGAATCCCTAATCACCGGAAGGCCTCCCCTG CTTTTAACCTCCGCCGTTTACTACGCTGCGAAAATTGAAAACTCAGGGGCGGTCCGGGTCTATCCGGGTCGGGCTATGGATAAGTATTTGGATTGGGTCA ACCCGATGACGTACGATTATAACGGGGCCTGGATCAATATTACTGGGCCTAACGCAGCCCTGTTCGATAACGTGGGTAAGTTGAGTACTGTGTACGGTAT CCAGTCGTGGTTGGCTGCGGGTGTTTCGAGTCGAAAGCTGGTTTTGGGTCTGCCCTTGTATGGCCGGACGTGGACCTTGGAAGACCCGAATGTTAACGGG ATCGGGTCGAGAGCGGTGGCGGCGGGACCCGGCAGTGGATCCTTGGGGTTCGATGATGTTCGGTTGTGGAATGCAGAGAACAAGGCGACTGTCGTTTATG ATGCTGAGACGGTGTCGTACTACTCGTATGCGAATGGTTCGTGGGTCGGGTACGATGATACCATGTCGATTGCTTTGAAGATCCAGTTTGCTCAGAGTAA AGGGCTTGGTGGGTATTTCTTTTGGGCTTTGGGCCAGGATAGGACTGCGGCTATCCCGAAAATAGCTTCACTTGCGTGGTAA
AA sequence Show only first row Show all	>Lus10018329 pacid=23179402 polypeptide=Lus10018329 locus=Lus10018329.g ID=Lus10018329.BGIv1.0 annot-version=v1.0 MASSTLTFPILLIFFFFTLFNAMINTNSQPMISPTPNPTPSPAPPAPAADIIRAAYWESFSDFPASSINTSHFTHVYYAFILLKPTTFELNITESDKIKL PQFTSALSGKNPPAKTLLSIGGAFPVSIAQVFAEMAKSRKSRVVFILSAIRTARKYGFDGLDIDWEYPVDPVEMRNYAVLLRECRQAVDFESLITGRPPL LLTSAVYYAAKIENSGAVRVYPGRAMDKYLDWVNPMTYDYNGAWINITGPNAALFDNVGKLSTVYGIQSWLAAGVSSRKLVLGLPLYGRTWTLEDPNVNG IGSRAVAAGPGSGSLGFDDVRLWNAENKATVVYDAETVSYYSYANGSWVGYDDTMSIALKIQFAQSKGLGGYFFWALGQDRTAAIPKIASLAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10018329 [exp]	0	1
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10042192 [exp]	3.7	0.8322
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Lus10009387 [exp]	5.9	0.7660
AT1G54200			unknown protein		Lus10026463 [exp]	6.2	0.8024
AT5G62850		ATVEX1, SWEET5,...	VEGETATIVE CELL EXPRESSED1, No...		Lus10022226 [exp]	6.9	0.7892
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10041344 [exp]	7.1	0.7704
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010714 [exp]	8.8	0.8043
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10004147 [exp]	17.7	0.7525
AT1G23965			unknown protein		Lus10030641 [exp]	17.8	0.7673
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	19.8	0.7650
					Lus10039427 [exp]	20.3	0.6868

Compare expression of checked genes

Lus10018329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.