Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32070 444 / 3e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 424 / 1e-151 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT5G10960 418 / 5e-149 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 349 / 1e-121 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT3G44260 284 / 3e-96 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G22250 279 / 4e-94 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G06450 165 / 1e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 129 / 1e-35 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 122 / 1e-33 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 118 / 2e-31 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017123 [exp] 566 / 0 AT2G32070 447 / 1e-160 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10003635 [exp] 427 / 2e-152 AT2G32070 435 / 6e-156 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10036291 [exp] 426 / 3e-152 AT2G32070 432 / 9e-155 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10034180 [exp] 292 / 2e-99 AT5G22250 410 / 4e-146 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10004212 [exp] 278 / 1e-93 AT3G44260 336 / 1e-116 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10021304 [exp] 278 / 1e-93 AT5G22250 335 / 8e-116 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10016980 [exp] 275 / 4e-91 AT5G22250 332 / 8e-114 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10007771 [exp] 157 / 3e-46 AT1G61470 170 / 5e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10042746 [exp] 157 / 7e-46 AT5G10960 150 / 2e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262500 [exp] 494 / 4e-179 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 491 / 4e-178 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 473 / 7e-171 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 469 / 4e-169 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.006G187200 [exp] 394 / 2e-139 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 298 / 1e-101 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 287 / 3e-97 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 281 / 1e-94 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 275 / 3e-92 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G040400 [exp] 234 / 1e-76 AT5G22250 253 / 4e-84 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10018330 pacid=23179284 polypeptide=Lus10018330 locus=Lus10018330.g ID=Lus10018330.BGIv1.0 annot-version=v1.0 ATGTCGATCATGTCGAAAGGTGATGAGTCTATCCATATTCGGGAGGTGTGGAATGACAATCTGGAAGAGGAATTCGCTTTGATTCGTGAGGTTGTTGACC TGTTCCCTTTTGTTGCGATGGATACTGAGTTCCCTGGTGTGGTCCTGCGACCTGTAGTGGTTTACAAGAACATCAATGATTACAACTACCTGACGTTGAA GGCTAATGTGGATATGCTGAAATTGATCCAGTTGGGGCTCACTTTCTCGGACGACAAGGGGAATTTGCCCACTTGCGGAACCGATGATGATAGGTTCTGC ATTTGGCAGTTCAACTTCCGCGAGTTCAATGTCACAGAGGACATCTATGCTAGCGACTCGATTGAGCTGCTGCGCCAGTGTGGGATTGATTTCAAGAAGA ACAACGAAAGGGGTATCGACGTCAGCCGGTTTGGTGAGCTTCTGATGTCCTCAGGGATTGTATTGAACCCTGAGGTGCATTGGGTTACTTTCCACAGTGG GTATGATTTCGGCTACTTGCTCAAGCTCTTGACATGCAAGAGCCTTCCAGACACTCAAGCTGGATTCTTCGACCTGATCAATATGTATTTCCCGATGGTG TATGACATCAAGCACTTGATGAAGTTCTGCAACAACCTCCATGGCGGCTTGAACAAACTTGCCGAGTTGCTGGAGGTCGAAAGAGTCGGTGTTTGCCATC AAGCTGGGTCGGATAGCTTGCTCACATCATGCACGTTTAGGAAGTTGAGGGATAATTACTTCAGCGGTTCAACAGAGAAGTATGCTGGTGTGTTGTATGG TCTTGGTATTGATAATGGCCAAAATACTAATTGA
AA sequence Show only first row Show all	>Lus10018330 pacid=23179284 polypeptide=Lus10018330 locus=Lus10018330.g ID=Lus10018330.BGIv1.0 annot-version=v1.0 MSIMSKGDESIHIREVWNDNLEEEFALIREVVDLFPFVAMDTEFPGVVLRPVVVYKNINDYNYLTLKANVDMLKLIQLGLTFSDDKGNLPTCGTDDDRFC IWQFNFREFNVTEDIYASDSIELLRQCGIDFKKNNERGIDVSRFGELLMSSGIVLNPEVHWVTFHSGYDFGYLLKLLTCKSLPDTQAGFFDLINMYFPMV YDIKHLMKFCNNLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDNYFSGSTEKYAGVLYGLGIDNGQNTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32070			Polynucleotidyl transferase, r...		Lus10018330 [exp]	0	1
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10011841 [exp]	4.2	0.9360
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	4.2	0.9458
AT1G68300			Adenine nucleotide alpha hydro...		Lus10041436 [exp]	6.6	0.9421
AT5G49710			unknown protein		Lus10000765 [exp]	7.5	0.9461
AT1G78895			Reticulon family protein (.1)		Lus10033352 [exp]	8.1	0.9402
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	8.1	0.9434
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10025024 [exp]	12.6	0.9221
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041154 [exp]	12.8	0.9166
AT1G11905			B-cell receptor-associated pro...		Lus10020025 [exp]	13.2	0.9388
					Lus10006539 [exp]	13.4	0.9284

Compare expression of checked genes

Lus10018330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.