Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04600 102 / 1e-25 Nucleotidylyl transferase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017122 [exp] 264 / 3e-87 AT3G04600 471 / 9e-166 Nucleotidylyl transferase superfamily protein (.1.2.3) Lus10026754 [exp] 114 / 1e-29 AT3G04600 692 / 0.0 Nucleotidylyl transferase superfamily protein (.1.2.3) Lus10025538 [exp] 114 / 4e-29 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G159300 [exp] 100 / 1e-24 AT3G04600 692 / 0.0 Nucleotidylyl transferase superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018331 pacid=23179379 polypeptide=Lus10018331 locus=Lus10018331.g ID=Lus10018331.BGIv1.0 annot-version=v1.0 ATGCATACAGGCTGTGGGCATATTTTGGTTTCGGCGGTGAAGATCACATCGGAAAAATTGGTTTTCCACCAGCCCAGAAAATGCTTATTCATTATTCAGG TAGACATATCAGTGAAGTACCTAAGCTTCTTCCTGGAGGATGATGCTGAGCTCGAGCACATTAAGACGGAATATGGCGCTGGACGAATGTTGACCGGGGA GGTAAAGAAGCGTCTTGCTGATGTTTCGACACAACTGTTAGATCGACATCGTGCAAATCGAGCTGCTGTGACAGACCAATTGAGAAAACGCCATAGCAAG CAGAAGGAAACTCTCTTACCCTCTTCTCTTCTTCCATTTGCTGCTGCTCCTCCTCATCGCTCCGCAGTAGCCACAGACCTCTCCGGTCATTCTCGGTTGA CTTTTCAAACCCTAAAGATCTCTTCACTTCAAGCTTCAAATCCACAAATCCGAGATCTGGTGACTAAACGTGGAATCGCGGCCTCATTTTGTGTAGGTCA AACTTCCATTTCCGCTCGGTCTCATACGGCGTTAGCGAAGTTCAGGTTCTCGATTTGCTGGTCTGACGTGTTACTTAATATGCTTGTTTTGGTCACAGAT CTGAGCTTGGTTGGGTCGGATTTAGTTACTGTAAAGCCTGTTTGA
AA sequence Show only first row Show all	>Lus10018331 pacid=23179379 polypeptide=Lus10018331 locus=Lus10018331.g ID=Lus10018331.BGIv1.0 annot-version=v1.0 MHTGCGHILVSAVKITSEKLVFHQPRKCLFIIQVDISVKYLSFFLEDDAELEHIKTEYGAGRMLTGEVKKRLADVSTQLLDRHRANRAAVTDQLRKRHSK QKETLLPSSLLPFAAAPPHRSAVATDLSGHSRLTFQTLKISSLQASNPQIRDLVTKRGIAASFCVGQTSISARSHTALAKFRFSICWSDVLLNMLVLVTD LSLVGSDLVTVKPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04600			Nucleotidylyl transferase supe...		Lus10018331 [exp]	0	1
AT5G13760			Plasma-membrane choline transp...		Lus10039585 [exp]	3.2	0.9394
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	4.1	0.9398
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10018884 [exp]	4.6	0.9245
					Lus10022087 [exp]	7.9	0.9201
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022060 [exp]	8.5	0.9113
AT4G34280			transducin family protein / WD...		Lus10026603 [exp]	8.8	0.9179
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10027931 [exp]	18.4	0.9336
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	18.7	0.9173
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10025420 [exp]	18.8	0.9042
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	19.2	0.9327

Compare expression of checked genes

Lus10018331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.