Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31880 370 / 6e-114 unknown protein AT1G15940 266 / 5e-75 Tudor/PWWP/MBT superfamily protein (.1) AT1G80810 226 / 2e-62 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G47690 201 / 9e-53 binding (.1.2.3) AT1G77600 119 / 7e-27 ARM repeat superfamily protein (.1.2.3) AT5G10950 73 / 3e-13 Tudor/PWWP/MBT superfamily protein (.1) AT4G32970 67 / 3e-11 unknown protein AT4G02070 65 / 3e-10 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT2G44440 44 / 0.0007 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017121 [exp] 1463 / 0 AT4G31880 473 / 2e-152 unknown protein Lus10026078 [exp] 209 / 2e-59 AT4G31880 228 / 1e-66 unknown protein Lus10002307 [exp] 200 / 3e-55 AT4G31880 214 / 4e-61 unknown protein Lus10038777 [exp] 197 / 3e-51 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10039082 [exp] 192 / 9e-50 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10018180 [exp] 103 / 5e-22 AT1G77600 864 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10025655 [exp] 102 / 8e-22 AT1G77600 899 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10010010 [exp] 59 / 3e-08 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10021959 [exp] 47 / 0.0001 AT4G32620 870 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G020400 [exp] 571 / 0 AT4G31880 389 / 3e-120 unknown protein Potri.006G263300 [exp] 566 / 0 AT4G31880 424 / 8e-133 unknown protein Potri.003G181300 [exp] 317 / 4e-94 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.001G046500 [exp] 286 / 1e-82 AT4G31880 267 / 1e-76 unknown protein Potri.018G109600 [exp] 237 / 2e-66 AT4G31880 180 / 3e-47 unknown protein Potri.006G186700 [exp] 221 / 3e-60 AT4G31880 167 / 8e-43 unknown protein Potri.016G005400 [exp] 185 / 1e-47 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 178 / 3e-45 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.002G084300 [exp] 150 / 1e-36 AT1G77600 1136 / 0.0 ARM repeat superfamily protein (.1.2.3) Potri.014G121701 [exp] 57 / 5e-08 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018332 pacid=23179269 polypeptide=Lus10018332 locus=Lus10018332.g ID=Lus10018332.BGIv1.0 annot-version=v1.0 ATGGCCTCTAGCGACAAGGACCTCGAAGAACAGCTCAAGGAAGCTGGAAATAAGCTCGTTAACCCTCCTTCTTCAGTGGATGAACTTCTCCCTCTTCTGG ATAAAGTCGATGGCTATCTAGCAAGGGTGGAGCAGTCACCTTCAGACTCGATGCAGAGTGCATTGGAACCATCACTCAAGGCATTGATCACAGACAAACT TTTTAGGCATTCAGATGTAGACGTTAATGTCGCAGTGGCATCTTGCATCAGTGAAATAACAAGAATAACTGCACCAGAAGCTCCTTATGAGGATGACCGG ATGAAGGATGTGTTTCAACTGATAGTTTCTTCATTTGAAAACCTGGATGACAAAACTAGTCGATCATATTTAAAGAGGACATCGATACTTGAGACAGTTG CCAAGGTCAGGTCATGTGTGGTGATGTTGGATCTTGAATGTGATGCATTGATAGTAGAGATGTTCCAGAAGTTCCTCAAGTCTGTAAGGGAGTTCCATCC AGAGAATGTTGTTTATTCCATGGAGACCATAATGAAACTTGTCTTAGAAGAGAGTGAAGAGATTCCTGTGGAACTGCTTTCACCCCTTTTAGTTACCGTG ACAAAGGGAAATAAGGAGGTGTTACCTGTTGCTCGCAAGCTTGGAGAGAAAGTTCTTGAAAGTTGTGCTGAGAAGATTAAACCGTACTTGGTGGATGCAT TGAAATCCTTGCAGACTTCTCCTGATGATTACTGGGATGTTGTTGGTTCAATATGTCGAGATGATAGTGTGGATGATATTGATGTGGCAGCTGCTAACAA GGTTGAAACAAGCAAGCCAGATGGGCTGTTGGTTGCCGAGGCTGCTGAAGCCACTCCAGAAGTACCTGATTCTACTGTGAGCAATGGTGTTGCTGATACT GGGGAGGCTGCATCATTGGCTATTGCAGATACCTTAAAGGGACAAGAGACAGATGCAACTGAGCCTGCAAAAAGCGCCAATGCTGATGAGAATGTTGAGG GTGATGTTTCTGCTGCCGAGAAAGAAAGCAAGCTAGACCATAAAGCCAACAAGAGAGGTGGGAAGCATGCTGCAAAATTTGATAGTACACATACTATTGA TGACAAAGATGTGAAACTACCACATGAAAAATACAGCAAGGATGCCCTGAGTTCACCTGATGCTCACCGATCTGTTTCAAGTGATGCTGCTGTTGCTTCT GAAAATAAGAAAAAGAATGATAATCAACCTCTCTCCCCAAAAGCAGCGAATAATGAATCCTTGACTGCTTCACCATCTGTGATTGTGGATGAAAGTCTGT CCAGAAGTGTTGGTCGACAAAAGAAGAAAGCAGGTTCTGTAAAAGAAGCTGGACAATCTACTGATGATGTCCTACATAAGGCAACTGAAGGAACAATCGA CTCCAAAGCAAAGTCCACCAAACGTGCTGGTAAAAAAGCAGCGGATGATGAATCTCTGGCTGCTTCACCATCTGTAAGCGGAAGCCCTGTGGATGAAAGT CGGTCCAAAAAGGTTGCTCGCTCAAAGAAGAAAGAAGGTTCGGTGAAAGAACTTGCACAATCGACTGATGATATCCTCCAGAAGGAAACTGAAGGAACAA GTGACTCCAAAGCAAAGCCAATCAAACGTGCTGGTAAAAATGCACATGTTGGAATTTCTAGCAATGACAAATCTCTAAAGAACACAAATAAATCAAAGAA AGAAGGTGGTGATGTAAGCGAACTAGATGCGAAACCGCTGAAGCATTTATCTAAGGCGAAAGATGGGAGTAAGAGTGCAGAAGGGGCTTTGTCAAAGCAG TCTGAGCAAAAGAGCAAGCGGCGTGGAAAGGCTGTTTCTGAGAAGAAGTTAGCAACAAGCTTAATGGAAGATGATGACAATGAAAATATTTCATCACTGA AGTCTACAGTTAAACTTGCAAAAGATGAACTACCCGTGGAAGACACACCCAAGACAAGTGGCAAAAGAAAACGTACTGTAGGCAAAGCGTCGGAAACCGA GGATACAGCTTATGGGGAAGAAGTTGTTGGTTCAAGGGTACGAGTATGGTGGCCAGATGACAAAGAGTTTTATAAAGGCACCATTCAGTCTTATGATTCT GCGGAAAACAAGCATGTGGTTTCCTATGACGACGGAGATGAAGAAAATCTGAATTTGAAGGAGGAAAAGTTTGAGTTCATTGATAGTGCATCTGAAATGG AGGTTGAGGACGAAGCACCCAAAGAATCAAGTCTCGATGCATCTGAGATGCCGGCAAAGAAGAAGGCAAAATCAGATCAGTCTAATAAGAAAGGAAAGAT GGACATCTCACCTAGAAGCAGGGGAAGTGGAGCTTCTAGCAAATCCAGGACTAAATTTGGGGGAAAAGGTGGGCGGAAGCCGAAGGCTATTGATGACGAC CCCAAAACTCCCAAGAACAACGATGATGATAGTAGTGCCAAGACCAAGAAACCTCCCACTACTACTCACAAGAGTGGTTTGAAAACTCTAGGAAAATCCA AGGCGGATGATATTGCAACACCTAAAGCTACTACTGCCAAATCCAAACAAGAAAGCAGGAAGACTGCAGGAAAATTGTCCAAGTTGGAGACTCCGAAGGC AACCTCTTCCAACGTGAAGGGGAAGTCAGTCAAGAGTGGCGGGAAACCCAATGCTAACGGAACAGGGAAGTCAAAAACCACCGGCTCTGCAAAGGTGAAA GACACGGAGGAAGCTGGAGAGAGCTCTGCAGATTCCGGTGAAGCACAGGAGGAGACCAAGAAGGAAAAGTCAACTGTTTCGAAGGAACAGGGAAGTGAAG CAAAGAGTGGAAAGAAGCGGCCACGTGCAGCTGCTTAA
AA sequence Show only first row Show all	>Lus10018332 pacid=23179269 polypeptide=Lus10018332 locus=Lus10018332.g ID=Lus10018332.BGIv1.0 annot-version=v1.0 MASSDKDLEEQLKEAGNKLVNPPSSVDELLPLLDKVDGYLARVEQSPSDSMQSALEPSLKALITDKLFRHSDVDVNVAVASCISEITRITAPEAPYEDDR MKDVFQLIVSSFENLDDKTSRSYLKRTSILETVAKVRSCVVMLDLECDALIVEMFQKFLKSVREFHPENVVYSMETIMKLVLEESEEIPVELLSPLLVTV TKGNKEVLPVARKLGEKVLESCAEKIKPYLVDALKSLQTSPDDYWDVVGSICRDDSVDDIDVAAANKVETSKPDGLLVAEAAEATPEVPDSTVSNGVADT GEAASLAIADTLKGQETDATEPAKSANADENVEGDVSAAEKESKLDHKANKRGGKHAAKFDSTHTIDDKDVKLPHEKYSKDALSSPDAHRSVSSDAAVAS ENKKKNDNQPLSPKAANNESLTASPSVIVDESLSRSVGRQKKKAGSVKEAGQSTDDVLHKATEGTIDSKAKSTKRAGKKAADDESLAASPSVSGSPVDES RSKKVARSKKKEGSVKELAQSTDDILQKETEGTSDSKAKPIKRAGKNAHVGISSNDKSLKNTNKSKKEGGDVSELDAKPLKHLSKAKDGSKSAEGALSKQ SEQKSKRRGKAVSEKKLATSLMEDDDNENISSLKSTVKLAKDELPVEDTPKTSGKRKRTVGKASETEDTAYGEEVVGSRVRVWWPDDKEFYKGTIQSYDS AENKHVVSYDDGDEENLNLKEEKFEFIDSASEMEVEDEAPKESSLDASEMPAKKKAKSDQSNKKGKMDISPRSRGSGASSKSRTKFGGKGGRKPKAIDDD PKTPKNNDDDSSAKTKKPPTTTHKSGLKTLGKSKADDIATPKATTAKSKQESRKTAGKLSKLETPKATSSNVKGKSVKSGGKPNANGTGKSKTTGSAKVK DTEEAGESSADSGEAQEETKKEKSTVSKEQGSEAKSGKKRPRAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31880			unknown protein		Lus10018332 [exp]	0	1
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	1.0	0.9536
AT2G07170			ARM repeat superfamily protein...		Lus10008545 [exp]	4.5	0.9485
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10020862 [exp]	4.9	0.9449
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	5.7	0.9464
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	5.9	0.9399
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	7.5	0.9383
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	9.0	0.9164
AT3G48900			single-stranded DNA endonuclea...		Lus10027451 [exp]	10.2	0.8928
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10032567 [exp]	11.1	0.9103
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10013226 [exp]	11.2	0.9354

Compare expression of checked genes

Lus10018332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.