Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48270 366 / 3e-127 GCR1 G-protein-coupled receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017120 [exp] 386 / 5e-132 AT1G48270 367 / 3e-124 G-protein-coupled receptor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G206000 [exp] 390 / 1e-136 AT1G48270 477 / 4e-171 G-protein-coupled receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF05462 [flax] [poplar] Dicty_CAR Slime mold cyclic AMP receptor
Representative CDS sequence Show only first row Show all	>Lus10018333 pacid=23179362 polypeptide=Lus10018333 locus=Lus10018333.g ID=Lus10018333.BGIv1.0 annot-version=v1.0 ATGGGGACTGTGCCGCTCAGTCTCGGGAACCTAACGGCTCACGATCGCCGACTTCTGAGGTCCGTCAATGCGGGAGCATCCTCCTTCTCGTTCCTCGGCT CTAGCTTCATTGTCCTCTGCTACCTCCTCTTCAGAGATCTCCGCAAGTTCTCCTTCAAGCTCGTTTTTTATCTAGCAATCTCTGTATGGATCGATCCTAT TACTTCTCTTCTTTCGTCTCTATGGCGATTCTGGCAGCTAACAAACTCACTTCAGTGTTTTTGCTTGTGTCAATCCATAGGATATGCTCTGCAGCTTCTT CAGTATAGTAGGCTTTTGAATTGCAGGGATCCCTCCACAGGCTTCTTTTGCTATGCTCAGGGATATAGCACTCATTTCTTCTGCGTCGCTTCTTTCCTGT GGACTACTACTATTGCTTTCACTCTGCATCGTACTGTTGTTAAACACAAAACTGATGTTGAAGACTTGGAGGCCATGTTCCATTTGTTCGTTTGGGGAAC TTCGTTGGTTATGACTGTCATACGCTCCATTGGAAATGACCATAGACACTTGGGAGGGGCATGGTGTTCAACACAATCAGGAAGAACAAAAAAGGCGATT CATTTCATAACATTTTATGTTCCGCTTTGGGGTGCTATTCTGTACAATGGGTTTACTTACTTTCAAGTCATACGAATGCTAAACAATGCTACTCGTATGG CTGTAGGCATGTCAGATCGTGCCTCTGATGTAAGGCCGGACATGAAGGCTTTGAACAGGTGGGGATACTATCCACTTATCCTTATAGGATCATGGGCTTT TGGCACAATAAATGTCATCCATGATTTTATTGAACCTGGCCATCAAATCTTTTGGCTTTCCGTGCTTGATGTGGGTACAGCTGCCCTAATGGTAACCCTC TCTACCATTATTGTTCTGGTTTCTGCTTTTGAGAAATCCCATCCCATTAATGTGGGAGCACCTGCTGATTGCCATTAG
AA sequence Show only first row Show all	>Lus10018333 pacid=23179362 polypeptide=Lus10018333 locus=Lus10018333.g ID=Lus10018333.BGIv1.0 annot-version=v1.0 MGTVPLSLGNLTAHDRRLLRSVNAGASSFSFLGSSFIVLCYLLFRDLRKFSFKLVFYLAISVWIDPITSLLSSLWRFWQLTNSLQCFCLCQSIGYALQLL QYSRLLNCRDPSTGFFCYAQGYSTHFFCVASFLWTTTIAFTLHRTVVKHKTDVEDLEAMFHLFVWGTSLVMTVIRSIGNDHRHLGGAWCSTQSGRTKKAI HFITFYVPLWGAILYNGFTYFQVIRMLNNATRMAVGMSDRASDVRPDMKALNRWGYYPLILIGSWAFGTINVIHDFIEPGHQIFWLSVLDVGTAALMVTL STIIVLVSAFEKSHPINVGAPADCH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10018333 [exp]	0	1
AT1G80690			PPPDE putative thiol peptidase...		Lus10026215 [exp]	4.0	0.8789
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005767 [exp]	6.3	0.8481
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10012710 [exp]	11.5	0.8624
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10038519 [exp]	12.3	0.8580
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Lus10020434 [exp]	13.4	0.8046
AT1G72480			Lung seven transmembrane recep...		Lus10008125 [exp]	14.4	0.8686
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	15.9	0.8507
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	19.1	0.8571
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10002337 [exp]	21.4	0.8341
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	23.9	0.8464

Compare expression of checked genes

Lus10018333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.