Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17510 421 / 4e-145 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT1G48260 406 / 3e-139 CIPK17, SnRK3.21 SNF1-RELATED PROTEIN KINASE 3.21, CBL-interacting protein kinase 17 (.1) AT1G30270 372 / 2e-125 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT2G26980 360 / 2e-121 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 357 / 7e-120 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G01140 351 / 2e-117 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT4G24400 342 / 5e-114 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G35410 333 / 1e-110 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT5G45810 321 / 2e-105 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT5G57630 306 / 2e-100 CIPK21, SnRK3.4 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042816 [exp] 367 / 2e-123 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 365 / 6e-123 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10002692 [exp] 331 / 2e-109 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10030210 [exp] 329 / 5e-109 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10019411 [exp] 326 / 1e-107 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10017120 [exp] 323 / 1e-105 AT1G48270 367 / 3e-124 G-protein-coupled receptor 1 (.1) Lus10032822 [exp] 312 / 2e-102 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10022749 [exp] 311 / 7e-102 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 310 / 1e-101 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G002500 [exp] 473 / 1e-165 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.006G062800 [exp] 375 / 6e-127 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 367 / 2e-123 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.009G021000 [exp] 361 / 1e-121 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.001G222600 [exp] 360 / 2e-121 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.002G177900 [exp] 348 / 1e-116 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.014G104200 [exp] 340 / 1e-113 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G096042 [exp] 335 / 4e-111 AT5G57630 535 / 0.0 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) Potri.006G171400 [exp] 329 / 9e-109 AT5G57630 549 / 0.0 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) Potri.018G130500 [exp] 318 / 1e-104 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018334 pacid=23179327 polypeptide=Lus10018334 locus=Lus10018334.g ID=Lus10018334.BGIv1.0 annot-version=v1.0 ATGCGAGTAGGAAAGTACGAGCTGGGACGAACCCTCGGAGAAGGAAGTTTCGGTAAAGTAAAGCTAGCCAGGAACTTGGACTCCGGCCTCCCTTTCGCCG TCAAGATCATCGACAAGCACAAAATCATCCGCCTCAACTTCTCCGACCAGATAAAGAGAGAGATCGTTACGCTGAGACTCCTCCGTCATCCTAACATCGT CAGATTATACGAGGTGTTGGCAAGCAAGTCGAAGATTTACATGGTTCTAGAGTATGTGAGTGGTGGCGAACTATACGACCGAATTGCCTCGAAGGGAAGA GGGGTAAGTGAAGCAGAAGGGAGGAAGATGTTTCACCAGTTGATTGATGGTGTCAGTTACTGCCATAACCACGGTGTCTTCCATCGGGATCTTAAGCCGG AGAATGTTCTTATTGATGCAAAAGGACGCATCAAGATATCGGACTTCGGACTCAGCGCATTGCCCCGCCATTTAGGGAAAGACGGGCTACTTCACACGCT ATGCGGAAGCCCGAACTACGTGGCGCCGGAGATACTACTCAACAAAGGATACGACGGTGCAGCCTCCGACGTCTGGTCTTGCGGGGTTATCCTGTACGTC ATCCTCACTGGATTCCTCCCTTTCGAAGACAGAAACATCACTTCCTTGTATTACAAGCAAATTAATAGTACTTTGACGATCGATGTGAAAGAGAAGATAG TGAAGGGGAAGGTGGAGATACCAAAGGAGCTGAGTTCGGGTGCGGGGAAGTTGATAATGAGGATATTGGACTCGAATCCTGATACCAGAATCACTATGTC AGACATCAAAGCTGACGAGTGGTTCAACCAAGATTACTCTCCTCCGACCAAGTACTTGAATCGACACGATCACCATCAGGACGACATCGTTAGAGACATC ATGGAGGACATTGATGATGAAGAGGAGGAAACTGGGTCTTTGATCAAGTACTCGCATGGTCGACGAGTACTTGATGGTCATGTAGCAGCCAGTACTAGTA CTAGTACCGGTAACGATCATGGTGTGAGGGTGGTGAATGCATTTCAACTAATTGGGATATCTTGTTTTCTTGACCTCTCTGGCTTCTTCGAGGAAGAGTT GATCATGATAAAAGTTCCGCAACACCACCAACGCATTACTCCTCCATCCAATTCCAACCTATCGGTTGCGGCAGAGGTATTGCCTATAAGTCCTTCGCTG CATGTCGTTGAACTGCGAAAATCATATGGAGACTCTGATGTTTACAGACAGTTATGTACAAAGCTATCAAAGGATTTGGGTGTTGAGTTGCCCCCAAGGT TGAGTTCTGAGAAGATCTGA
AA sequence Show only first row Show all	>Lus10018334 pacid=23179327 polypeptide=Lus10018334 locus=Lus10018334.g ID=Lus10018334.BGIv1.0 annot-version=v1.0 MRVGKYELGRTLGEGSFGKVKLARNLDSGLPFAVKIIDKHKIIRLNFSDQIKREIVTLRLLRHPNIVRLYEVLASKSKIYMVLEYVSGGELYDRIASKGR GVSEAEGRKMFHQLIDGVSYCHNHGVFHRDLKPENVLIDAKGRIKISDFGLSALPRHLGKDGLLHTLCGSPNYVAPEILLNKGYDGAASDVWSCGVILYV ILTGFLPFEDRNITSLYYKQINSTLTIDVKEKIVKGKVEIPKELSSGAGKLIMRILDSNPDTRITMSDIKADEWFNQDYSPPTKYLNRHDHHQDDIVRDI MEDIDDEEEETGSLIKYSHGRRVLDGHVAASTSTSTGNDHGVRVVNAFQLIGISCFLDLSGFFEEELIMIKVPQHHQRITPPSNSNLSVAAEVLPISPSL HVVELRKSYGDSDVYRQLCTKLSKDLGVELPPRLSSEKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17510		CIPK1, SnRK3.16	SNF1-RELATED PROTEIN KINASE 3....		Lus10018334 [exp]	0	1
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10041711 [exp]	2.4	0.9532
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10024038 [exp]	3.7	0.9513
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Lus10005221 [exp]	6.0	0.9357
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	10.4	0.9443
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	12.4	0.9463
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	25.4	0.9439
AT3G01430			unknown protein		Lus10014527 [exp]	25.5	0.9383
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017934 [exp]	26.2	0.9330
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	26.9	0.9417
					Lus10043397 [exp]	27.9	0.9316

Compare expression of checked genes

Lus10018334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.