Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05610 422 / 4e-140 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 417 / 3e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 411 / 3e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 410 / 2e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10710 409 / 2e-136 RHS12 root hair specific 12 (.1) AT2G26450 404 / 6e-134 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04960 389 / 9e-129 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 380 / 9e-125 ATPME2 pectin methylesterase 2 (.1) AT3G14310 372 / 1e-121 ATPME3 pectin methylesterase 3 (.1) AT1G53840 364 / 9e-119 ATPME1 pectin methylesterase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017119 [exp] 485 / 5e-171 AT4G33230 271 / 2e-87 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10023775 [exp] 447 / 3e-151 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 447 / 3e-151 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 432 / 1e-144 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10002976 [exp] 407 / 4e-136 AT2G26450 429 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 392 / 6e-132 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10017118 [exp] 385 / 2e-131 AT3G10710 96 / 2e-22 root hair specific 12 (.1) Lus10006940 [exp] 393 / 6e-130 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 389 / 1e-128 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G209000 [exp] 485 / 4e-166 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 481 / 1e-164 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 471 / 3e-160 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 468 / 2e-159 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 464 / 1e-157 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 451 / 1e-152 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 415 / 1e-138 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247600 [exp] 407 / 2e-135 AT3G10710 609 / 0.0 root hair specific 12 (.1) Potri.005G022900 [exp] 405 / 1e-134 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.008G011200 [exp] 394 / 3e-130 AT3G10710 621 / 0.0 root hair specific 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10018335 pacid=23179385 polypeptide=Lus10018335 locus=Lus10018335.g ID=Lus10018335.BGIv1.0 annot-version=v1.0 ATGCAGGTGAGCAGAAAGCCATTACTAGCAGGAGTGTCGATCATGCTAGTGGTCGGCGTAGTCATCGGCGTAGTAGTCAGCGTCAAAAAGAGCCACGACG GCCATTCCGGAAATGACGGAACTAACCCTGACGTGGACGCACTCTCCTCCGCTTCAAGGGCAGTAGCGGCAATCTGCGTCCACACGGACCACAAGCAGCA CTGCGTCGACAGCATGAAATCCGTCTCCCAGAACGAATCCGCAACCCCCCTGGATTACATGAAGGCCGCCGTCAACTACACCATGGCCTACGTGGTCGAG GCGGCACGAAACGCTGCATTGCTGCAGAACCAGACATACAAGGGCAAGGGTAAAGACGTCAATATGACGCGGGCCTTGGCGTTCAAGTACTGCGGGGAGC TGCTGGATTTGAGCGCTGACGAGTTAGAAAGGACGTTGGCCCAGCTGGAGAATGTGAAGCAGACGGTTGATGTGATGGAGCTTGAGCAGGAGATTCGGAA CTGGCTTAGCGCGGTTATGACGTACCACGGTACTTGTGTGGATGGATTCGTTGGGGATGACGGTGGAGATGATTTGCATGAAGGGATCTCGAAGGGGTTG GAGAACTCGACTCAGTTGACGAGTAATGCACTCGCGATATTCGCGAGTGTGTCAGAGATTCTCACCGATTTCAACCTTACATCGTCGTTCCAGGAGCTAC TGGGAGGGCGAAGGAGGATGCTGGAGAAGAAGGACGTCGTTGGTAATGACGATGACGTGGATGACGAGGCCCACCGGGGGTTTCCACGTTGGATGTCCGG GAAGGACAGGAAGCTGTTGGTGGCCGGTGCAGGTAACTTGCCGAAGCCCGACGTGGTGGTGGCGAAAGACGGCAGCGGGCAGTTCACGACGATCACTGCT GCGCTGGCTTCTTACCCGAAGAATCTCAACGGCAGGAGATTCGTGATTTATGTCAAGGCTGGGATCTATGATGAGTATATTATTATACCAAAAGACCAGA TCAATATTTTCATGTACGGTGATGGTCCACGTAAGACCATCGTTACTGGACGGAAGAGCTTCAAGGATGGTGTCCCCACTTACGGCACTGCCTCCTTCTC TGTGATCGGGAACGGGTTCATGTGCCGATCAATGGGGTTCCAGAACACAGCAGGAGCAATAGGCCACCAAGCAGTAGCCCTCAGAGTCCAATCCGACCGT TCATCCTTCTACAACTGCAGAATGGACGGCTACCAAGACACCCTCTACCAACAAGCCCACAACCAATTCTACCGCAACTGCATCATCTCCGGCACCGTCG ACTTCATCTTCGGCGACTCCTCATCCCTCGTCCAGAATTGCCTCATCATCGTCCGCATGCCCATGGAAGGTCAGCAGAACACCGTCACCGCCCAGGGCAA ACAAGACAAGAACGAAGTCACCGGACTCGTCATCCAGAACTGCCAGATCGTCCCCGAGGCCAACCTGGCACCGGTCACCGCCAAGTTCCCATCTTTCCTA GGAAGGCCGTGGAAGCAGTACTCGACGACGATTGTGATGGAGTCGACCATCGGAGGGTTCATAAGCCCTCTTGGTTGGATGCCTTGGCAAGGGAGCAACT ACCTGGACACGTTGTTTTATGGGGAGTACGGGAACAAAGGACCCGGGTCAGGTACGGGCGGGCGGGTCAATTGGAAAGGGTACCATGTTTTAACCCAGAA GGCTCAGGTTTTGCAATTTACGGCGGGTCCTTTCCTTGCTGCTTCTCAGTGGTTGCCGGCGGCTGGGATTCCGTTCATTTCTGGCCTCCAATATCCTTAG
AA sequence Show only first row Show all	>Lus10018335 pacid=23179385 polypeptide=Lus10018335 locus=Lus10018335.g ID=Lus10018335.BGIv1.0 annot-version=v1.0 MQVSRKPLLAGVSIMLVVGVVIGVVVSVKKSHDGHSGNDGTNPDVDALSSASRAVAAICVHTDHKQHCVDSMKSVSQNESATPLDYMKAAVNYTMAYVVE AARNAALLQNQTYKGKGKDVNMTRALAFKYCGELLDLSADELERTLAQLENVKQTVDVMELEQEIRNWLSAVMTYHGTCVDGFVGDDGGDDLHEGISKGL ENSTQLTSNALAIFASVSEILTDFNLTSSFQELLGGRRRMLEKKDVVGNDDDVDDEAHRGFPRWMSGKDRKLLVAGAGNLPKPDVVVAKDGSGQFTTITA ALASYPKNLNGRRFVIYVKAGIYDEYIIIPKDQINIFMYGDGPRKTIVTGRKSFKDGVPTYGTASFSVIGNGFMCRSMGFQNTAGAIGHQAVALRVQSDR SSFYNCRMDGYQDTLYQQAHNQFYRNCIISGTVDFIFGDSSSLVQNCLIIVRMPMEGQQNTVTAQGKQDKNEVTGLVIQNCQIVPEANLAPVTAKFPSFL GRPWKQYSTTIVMESTIGGFISPLGWMPWQGSNYLDTLFYGEYGNKGPGSGTGGRVNWKGYHVLTQKAQVLQFTAGPFLAASQWLPAAGIPFISGLQYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05610			Plant invertase/pectin methyle...		Lus10018335 [exp]	0	1

Compare expression of checked genes

Lus10018335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.