Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034858 [exp] 78 / 7e-17 ND / Lus10020961 [exp] 61 / 4e-10 ND / Lus10011832 [exp] 52 / 1e-08 ND / Lus10003899 [exp] 54 / 3e-08 ND / Lus10015601 [exp] 52 / 2e-07 ND / Lus10002975 [exp] 46 / 2e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018336 pacid=23179331 polypeptide=Lus10018336 locus=Lus10018336.g ID=Lus10018336.BGIv1.0 annot-version=v1.0 ATGGTTGTTCCTAAGGAGGGCGTTCCTCGACTGGTGCCCTATGCAGCGACGACCCAAGGTGCAACTCTGTCTACCACCGACAAGTATTTGATTTCTCCGT CCAAGTACTGGATCTTTGTTAGTCAAGAAGGGGTTGTAGAAAGGAAGGATTTTCTGGAGTGGTGCCTTTTTTTCAAGGCTTGCAACCGTACGCCGAAATC AATTGTGTGGTCCTCTTTCCGGCACTGGATGCAGCATAACTGGGGTGTTTCTGAGTCGGCTCCGGTTTCCACTTTGGAAGATGATTTATGGATATTTGAG TGCGCATCCGAGTCGGAAGTGGATAGGATTCTCAGGATAGGAGAGGCATGTGGCGTGTTCGTTGAAGCTCGGACTGGGGTTGGCCCTTTGGGCTCGGTTC GAATCAAGATTCGGAAGGAAGGTGTTATCCCCTCGTTGTTGTTCCTCCGGTGCACGGACGAGGTGTCCAAGGTGAGGGTGATGCAGGAAGACCCACCTTT GGTGGCGGTGGGAGCGTGGCGGGTGGATTACCTGCCTCCAGCTCCGGTGCTTCAGGTGGGCCAGGAGAGGGAATGGAAGCTGGTGCAGGGGCAATGCTCT TATCCTCCAGTGGAAGTTCAAGCACCTTTATCTCCTAGCTTTGTGGAGGAAGGTGCGCCAGATATGATGGAGTTGATATTTCTGGTGGTGTTGAGGTGTC TATGGCGGAAGCAAAGGGCGTTGCGGTGTCGATGGACGGCGTGGAGGGCATTGCACCACTGGTGGACGACGTGTGGGTCCCTTCCTGTCCTAGTCAGCTT TCTCTCTCTTTCGTTTCTTTGGAGGAAGGTTCAGAGCCGTACGAGGCTGACAGTATGGCTTTGGTCTCAAAGTTGGTCGATGTGA
AA sequence Show only first row Show all	>Lus10018336 pacid=23179331 polypeptide=Lus10018336 locus=Lus10018336.g ID=Lus10018336.BGIv1.0 annot-version=v1.0 MVVPKEGVPRLVPYAATTQGATLSTTDKYLISPSKYWIFVSQEGVVERKDFLEWCLFFKACNRTPKSIVWSSFRHWMQHNWGVSESAPVSTLEDDLWIFE CASESEVDRILRIGEACGVFVEARTGVGPLGSVRIKIRKEGVIPSLLFLRCTDEVSKVRVMQEDPPLVAVGAWRVDYLPPAPVLQVGQEREWKLVQGQCS YPPVEVQAPLSPSFVEEGAPDMMELIFLVVLRCLWRKQRALRCRWTAWRALHHWWTTCGSLPVLVSFLSLSFLWRKVQSRTRLTVWLWSQSWSM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018336 [exp]	0	1
AT5G04440			Protein of unknown function (D...		Lus10038659 [exp]	5.5	0.8525
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10034061 [exp]	7.2	0.8031
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10042652 [exp]	13.7	0.7981
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015538 [exp]	17.2	0.8166
AT4G01935			unknown protein		Lus10010062 [exp]	17.7	0.8318
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	28.4	0.8257
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10039740 [exp]	29.2	0.8119
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10029680 [exp]	32.2	0.8230
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10025676 [exp]	33.9	0.8198
AT1G71090			Auxin efflux carrier family pr...		Lus10004059 [exp]	34.9	0.7753

Compare expression of checked genes

Lus10018336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.