Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06483 617 / 0 ATPDHK, PDK pyruvate dehydrogenase kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017117 [exp] 585 / 0 AT3G06483 461 / 1e-163 pyruvate dehydrogenase kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G002000 [exp] 638 / 0 AT3G06483 653 / 0.0 pyruvate dehydrogenase kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [flax] [poplar] PF10436 [flax] [poplar] BCDHK_Adom3 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
Representative CDS sequence Show only first row Show all	>Lus10018337 pacid=23179279 polypeptide=Lus10018337 locus=Lus10018337.g ID=Lus10018337.BGIv1.0 annot-version=v1.0 ATGGCGGGTGCAGTTAAGAAGAAGGTGATGGAGAGTATGGGGAAGAACATGGCGGAGGAAGTACAGAGGTGGGGATGCATGAAGCAGAACGGGGTTAGCT TGAGGTACATGCTTGAATTCGGTTCCAAGCCTACCATCCGCAACCTCTTGTTCTCTGCCCAGTTCCTCCACAAGGAGCTTCCTATTCGGATTGCTCGCCG TGTTATGGACCTTGACACCCTCCCTTCCGGCCTCTCTGACAAACCCGCCGTCCTCAAGGTGCGAGACTGGTACTTGGATTCTTTCCGTGATCTCAGAGCC TTCCCTGAGATAAAGGACCCCAGTGATCAGGCTGACTTTACGCATATGATCAAAGCAATTAAGGTGAGGCACAACAATGTGGTTCCCATGATGGCTTTAG GCGTTCAACAGTTGAAGAAAGGCTTGAAGCACCCCACTCTTTATGAGGGTCTAGATGAGATTCATGAGTTTCTCGATAGGTTCTATATGTCCAGGATTGG TATCCGTATGCTCATCGGGCAGCATGTGGAGTTGCAGAATCCTAATCCTGCTCCTCATTGTGTGGGTTGTATACATACTAAAATGTCCCCAGTTGAGGTG GCGCGGAATGCTAGTGAGGATGCTCGTTCTATCTGTTCCCGAGAGTATGGCAGTGCTCCCGATGTTACCATCTACGGAGATCCCAATTTTACGTTCCCGT ACGTTCCGGCGCATTTGCATCTGATGGTATTTGAGTTGGTTAAGAACTCGGTGCGAGCTGTGCAAGAGCGCTACATCGACTCAGATAAAGTAGCACCTCC AGTTCGGATAATAGTTGCTGAAGGAATAGAAGATGTTACCATAAAGATTTCCGACGAAGGAGGTGGCATCCCAAGAAGCGGCCTTCCGAAGATTTTCACG TACCTTTACAGCACGGCCAGAAACCCGCTGGATGAGCATTCTGATCTTGGAACTGCTGATTCAGCAACAATGGCTGGATATGGATACGGTATCCCTATTA GTCGCTTGTATGCTCGATATTTCGGAGGTGACCTTCAAATTATCTCCATGGAAGGATACGGCACTGATGCATACCTCCATCTGTCGCGATTGGGAGATTC ACAAGAACCTCTCCCCTGA
AA sequence Show only first row Show all	>Lus10018337 pacid=23179279 polypeptide=Lus10018337 locus=Lus10018337.g ID=Lus10018337.BGIv1.0 annot-version=v1.0 MAGAVKKKVMESMGKNMAEEVQRWGCMKQNGVSLRYMLEFGSKPTIRNLLFSAQFLHKELPIRIARRVMDLDTLPSGLSDKPAVLKVRDWYLDSFRDLRA FPEIKDPSDQADFTHMIKAIKVRHNNVVPMMALGVQQLKKGLKHPTLYEGLDEIHEFLDRFYMSRIGIRMLIGQHVELQNPNPAPHCVGCIHTKMSPVEV ARNASEDARSICSREYGSAPDVTIYGDPNFTFPYVPAHLHLMVFELVKNSVRAVQERYIDSDKVAPPVRIIVAEGIEDVTIKISDEGGGIPRSGLPKIFT YLYSTARNPLDEHSDLGTADSATMAGYGYGIPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10018337 [exp]	0	1
AT1G71480			Nuclear transport factor 2 (NT...		Lus10041048 [exp]	1.4	0.9329
					Lus10040811 [exp]	1.4	0.9422
AT4G38225			unknown protein		Lus10026560 [exp]	1.7	0.9317
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	6.0	0.9297
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	6.5	0.9013
AT4G14450		ATBET12	unknown protein		Lus10021878 [exp]	7.7	0.9217
AT3G09050			unknown protein		Lus10035515 [exp]	8.7	0.9286
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10002428 [exp]	9.5	0.9064
AT1G61930			Protein of unknown function, D...		Lus10020047 [exp]	11.0	0.9201
AT1G61600			Protein of unknown function (D...		Lus10030977 [exp]	11.5	0.9010

Compare expression of checked genes

Lus10018337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.