Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17440 347 / 3e-120 ATNPSN13, NPSN13 novel plant snare 13 (.1.2) AT1G48240 338 / 7e-117 ATNPSN12 novel plant snare 12 (.1) AT2G35190 261 / 1e-86 NSPN11, ATNPSN11, NPSN11 novel plant snare 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017116 [exp] 422 / 2e-149 AT3G17440 410 / 6e-146 novel plant snare 13 (.1.2) Lus10003004 [exp] 264 / 1e-87 AT2G35190 366 / 5e-129 novel plant snare 11 (.1) Lus10011034 [exp] 194 / 6e-61 AT2G35190 274 / 2e-93 novel plant snare 11 (.1) Lus10000163 [exp] 124 / 2e-35 AT3G17440 103 / 3e-29 novel plant snare 13 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001900 [exp] 367 / 2e-128 AT3G17440 429 / 8e-154 novel plant snare 13 (.1.2) Potri.003G085200 [exp] 287 / 7e-97 AT2G35190 391 / 6e-139 novel plant snare 11 (.1) Potri.001G149200 [exp] 278 / 3e-93 AT2G35190 389 / 4e-138 novel plant snare 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF03908 [flax] [poplar] Sec20 Sec20
Representative CDS sequence Show only first row Show all	>Lus10018338 pacid=23179276 polypeptide=Lus10018338 locus=Lus10018338.g ID=Lus10018338.BGIv1.0 annot-version=v1.0 ATGGCCACCAACTTGCAGATGAGTTCTCGGATGGAGCAGATCCATGGCGAGATCAATGACAATTTCCGTGCTCTCTCAAATGGCTTCCAGAGGCTTGACA AGATTAAAGATTCGAATCGACAGAGTAAGCAGCTCGAGGAGCTTACTGGCAGGATGAGAGAATGCAAAAGACTGATTAAGGAGTTTGACAGTGAGATTAA AGATGAGGAAGGCAGAAACCCACCTGAGGTCACTAAACAGCTCAATGATGAGAAGCAATCCATGATAAAGGAGCTGAATTCCTATGTTGCATTGAGGAAA ACGTACACGAACAATCTTGGTAACAAGAGGGTTGAATTGTTTGATATGGGAGCTGGGGCCAGTGAACCTATGGGTGATGACAATGTTCGAATGGCATCAG CTATGTCAAACCAAGAGCTTATTGATCATGGGACGCAACAAATGGATGAGACCGATCAGGCAATTGAGCGCTCCAAAAAGGTTGTTCAACAAACAGTGGA AGTGGGCACTCAGACTGCTGTTACTTTGAAAGGTCAAACTGAGCAAATGGAACGAATTGTTAATGAGCTGGACACAATTCAATTTTCAATTAAGAAGGCT TCACAGCTGGTAAAGGAGATTGGGAGGCAGGTGGCAACTGATAAATGCATTATGCTTTTCTTGTTTCTTATTGTCTGTGGTGTAATAGCCATAATCATTG TGAAGAAGTCAAAGAAGATGGATATGATAATTGATAAACTAACTCGGTCTTTTACACCGATATATGCACAGAACTGTGCCTTCGAATATGCAGTATACCT CATTATTTGTTTGTATATCGCTCTAGATCGTCAACCCGGGCAACAAGGATATCAGGGACATCCCCGGATTGGCACCCCCAGCCCCGGCAGCCAGGAGACT GTTATATGCAAGGGGTCCACGAAATCTCGAGTAGATTCATCTGTTCAGGAGCCATGTAACAAGCCATCACAAGTGTGGATTGGAGCAAAGCATGATGCTT GCTAG
AA sequence Show only first row Show all	>Lus10018338 pacid=23179276 polypeptide=Lus10018338 locus=Lus10018338.g ID=Lus10018338.BGIv1.0 annot-version=v1.0 MATNLQMSSRMEQIHGEINDNFRALSNGFQRLDKIKDSNRQSKQLEELTGRMRECKRLIKEFDSEIKDEEGRNPPEVTKQLNDEKQSMIKELNSYVALRK TYTNNLGNKRVELFDMGAGASEPMGDDNVRMASAMSNQELIDHGTQQMDETDQAIERSKKVVQQTVEVGTQTAVTLKGQTEQMERIVNELDTIQFSIKKA SQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIIVKKSKKMDMIIDKLTRSFTPIYAQNCAFEYAVYLIICLYIALDRQPGQQGYQGHPRIGTPSPGSQET VICKGSTKSRVDSSVQEPCNKPSQVWIGAKHDAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10018338 [exp]	0	1
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	2.0	0.9342
AT3G16200			unknown protein		Lus10006829 [exp]	2.0	0.9334
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10026813 [exp]	3.2	0.9050
AT4G04040		MEE51	maternal effect embryo arrest ...		Lus10037972 [exp]	3.2	0.9276
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10004040 [exp]	3.5	0.9263
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009248 [exp]	4.6	0.9255
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10010887 [exp]	4.9	0.9283
AT3G12110		ACT11	actin-11 (.1)		Lus10004956 [exp]	5.2	0.9296
AT3G16200			unknown protein		Lus10037579 [exp]	8.1	0.9044
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	9.5	0.8974

Compare expression of checked genes

Lus10018338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.