Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48130 338 / 2e-119 ATPER1 1-cysteine peroxiredoxin 1 (.1) AT5G06290 96 / 7e-24 2CPB, 2-CysPrxB ,2-Cys Prx B 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) AT3G11630 95 / 1e-23 Thioredoxin superfamily protein (.1) AT3G52960 45 / 1e-05 Thioredoxin superfamily protein (.1) AT3G26060 44 / 2e-05 ATPRXQ ,ATPRX Q peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017112 [exp] 444 / 3e-161 AT1G48130 335 / 3e-118 1-cysteine peroxiredoxin 1 (.1) Lus10008810 [exp] 131 / 2e-39 AT1G48130 107 / 2e-30 1-cysteine peroxiredoxin 1 (.1) Lus10016969 [exp] 97 / 5e-24 AT5G06290 403 / 2e-143 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10021295 [exp] 97 / 5e-24 AT5G06290 404 / 6e-144 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10034892 [exp] 42 / 0.0001 AT3G26060 281 / 6e-97 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10033424 [exp] 42 / 0.0001 AT3G26060 278 / 1e-95 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10003373 [exp] 42 / 0.0002 AT3G52960 291 / 3e-100 Thioredoxin superfamily protein (.1) Lus10002843 [exp] 40 / 0.0006 AT3G52960 290 / 3e-100 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G099900 [exp] 378 / 3e-133 AT1G48130 322 / 2e-111 1-cysteine peroxiredoxin 1 (.1) Potri.006G204900 [exp] 95 / 1e-23 AT5G06290 385 / 2e-136 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.016G072100 [exp] 94 / 3e-23 AT5G06290 390 / 3e-138 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.018G063300 [exp] 45 / 8e-06 AT3G26060 275 / 1e-94 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.006G137500 [exp] 44 / 2e-05 AT3G26060 286 / 5e-99 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00578 [flax] [poplar] AhpC-TSA AhpC/TSA family CL0172 [flax] [poplar] PF10417 [flax] [poplar] 1-cysPrx_C C-terminal domain of 1-Cys peroxiredoxin
Representative CDS sequence Show only first row Show all	>Lus10018342 pacid=23179312 polypeptide=Lus10018342 locus=Lus10018342.g ID=Lus10018342.BGIv1.0 annot-version=v1.0 ATGCCTGGACTCACCATCGGGGACACTGTCCCAAATCTGGAAGTGGAGAGCACTCATGGAGTCATCAATCTCCACGACTTCTTTACCAATTCCTGGACCA TCCTCTTCTCTCACCCCGGTGATTTCACGCCGGTGTGCACGACGGAGCTGGGGAAGATGGCAGCTTATGCGCCGGAGTTCGAGAAGAGAGGGGTCAAACT CCTGGGCTTGTCATGCGACGACGTTTTGTCTCACGTCGAGTGGATCAAGGACGTTGAAGCCTTCACCCCGGGGAGCAAGGTGACTTACCCAATCATCTCC GATCCGAATCGGGAGGTGATCAAGGAGCTGAACATGGTGGATCCCGACGAGAAAGATCCGTCCGGGAACAACGTCCCTTCCCGTGCTCTGCATATTGTGG GCCCTGATAAGAAGATAAAGCTGAGCTTTCTGTACCCGGCGAGCACGGGGAGGAACATGGAGGAAGTGATGAGGGTGGTGGAGTCGCTGCAGAAGGCGTC GAAGAACAAGATAGCAACTCCGGTGGACTGGAAGCCAGGGGATGCGGTGGTGATATCTCCCAGCGTGTCCAACGAGGAGGCTGATAAGATGTTCCCACAG GGGTACAAGACTGCCGACCTCCCTTCCAAGAAAGGCTACCTCCGCTTTACCCATGTTGACTAA
AA sequence Show only first row Show all	>Lus10018342 pacid=23179312 polypeptide=Lus10018342 locus=Lus10018342.g ID=Lus10018342.BGIv1.0 annot-version=v1.0 MPGLTIGDTVPNLEVESTHGVINLHDFFTNSWTILFSHPGDFTPVCTTELGKMAAYAPEFEKRGVKLLGLSCDDVLSHVEWIKDVEAFTPGSKVTYPIIS DPNREVIKELNMVDPDEKDPSGNNVPSRALHIVGPDKKIKLSFLYPASTGRNMEEVMRVVESLQKASKNKIATPVDWKPGDAVVISPSVSNEEADKMFPQ GYKTADLPSKKGYLRFTHVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10018342 [exp]	0	1
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10007205 [exp]	2.0	0.8353
AT3G48950			Pectin lyase-like superfamily ...		Lus10027516 [exp]	3.2	0.8060
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	3.7	0.8410
AT4G31115			Protein of unknown function (D...		Lus10025683 [exp]	4.5	0.7580
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10019993 [exp]	6.2	0.8172
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10028424 [exp]	9.9	0.7696
AT3G07600			Heavy metal transport/detoxifi...		Lus10016060 [exp]	11.5	0.8062
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	11.5	0.7808
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10017402 [exp]	12.4	0.7776
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10013794 [exp]	14.4	0.7113

Compare expression of checked genes

Lus10018342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.