Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48110 588 / 0 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT3G17330 500 / 1e-170 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT3G13060 289 / 2e-88 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G79270 285 / 4e-88 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT3G13460 275 / 5e-83 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT5G61020 270 / 8e-83 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT1G55500 268 / 7e-81 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT5G58190 256 / 3e-77 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT1G27960 249 / 1e-74 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT1G09810 246 / 7e-74 ECT11 evolutionarily conserved C-terminal region 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017111 [exp] 1210 / 0 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10034792 [exp] 289 / 2e-88 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10033335 [exp] 287 / 1e-87 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10035790 [exp] 285 / 1e-83 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10037364 [exp] 270 / 5e-82 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10027582 [exp] 268 / 8e-81 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10037028 [exp] 264 / 2e-79 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2) Lus10002624 [exp] 261 / 1e-78 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 262 / 1e-77 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G152300 [exp] 716 / 0 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.008G100200 [exp] 678 / 0 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.008G080800 [exp] 326 / 5e-103 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.010G175500 [exp] 296 / 1e-91 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.014G001000 [exp] 291 / 6e-89 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.007G002800 [exp] 288 / 5e-88 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.004G223800 [exp] 283 / 1e-86 AT1G09810 352 / 2e-115 evolutionarily conserved C-terminal region 11 (.1) Potri.001G056100 [exp] 276 / 3e-84 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.006G079900 [exp] 274 / 7e-83 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.003G008400 [exp] 270 / 1e-81 AT1G09810 346 / 3e-113 evolutionarily conserved C-terminal region 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10018343 pacid=23179292 polypeptide=Lus10018343 locus=Lus10018343.g ID=Lus10018343.BGIv1.0 annot-version=v1.0 ATGCACAACGGAGGAGCCCCTGAGTTTGTTGTTGATCAGGGAATGTATTATCCTACTGCCACCAACTATGGCTATTACTGTACAGGTTTTGAGTCACCCG GTGAATGGGAGGACCACCACGGCATTTTTGGTGTAGATGGTCCAGAAGTCCAGTATGCGGGTGCACAAACTGAAAATTTACGTTATGTTTGTTATACACC TAGCTATGGATATGCACAGTCTTCTTACAATCCATACAATCCTTACATACCCGGGGCCATGATGGGAGTGGATGACCCATATTTAGGGGCCCAACAATAC TATGCTCTTCCACCTTATCAGGACTCTATGTCTTCAGCGGGTTATATTCCCTATGTTGTTGAACAAGACATGGTTCCAACCAATTTGGTCGACCAACTTC CTGATGCTGGTATTGTATATGCTGATGAACAAGGTGGGAGAACTTCTAAACAAGGTCCAACATCTGCAGCGTATTCTAGGAATCCTTCTAAATCCTCTGC AAATCAGACCCAGTCTTTCTCAAGGACTTCTGAGGGGCCTAAGCCTAATGTTGGAAGTAGCAAGTATTCTGTTGTGCATGAAAATGCTTCTTCTGGTAGA TTTCAGGCACCAGCTTCACTTGTTCTTCAGGGAAGAAATGCATCTGGAACCGCCCATACTGTTGACAACACATTAAAGGTGAAAGCTCCACCTCTGCGTG ACCAACTGAAATTTGCTCTGCCTGTCAACAATAGCTTCACTGATTTTGGGTCAGAGTCACACCTGAGACCTTTGGATAAGCATTGGTCAAATATCCAGGC TGGCAGAACTTTCAATGATGTAAACGGGTGCCAAGAAGCATTGGGTGAGCAGAATCGTGGACCTAGAACGACCAGATCGGAAAACCAATTAGCTGTTAAA TCGTACTCGACTAGGATTGGTGGTTCTAATGCAGAGGGGAGCATTATCATACATACGGATCGATACAACAGAGATGATGTCCAAATTGATTTCTCTTTTG CAAAATTCTTTGTAATCAAATCATATAGCGAGGATGATGTTCACAAGAGCATTAAATACAATGTTTGGTCCTCAACACTACACGGGAACAAAAAGCTGCA GAGTGCCTATGAAGATGCTCAGAAGATAGCTGCAGAGAAAGCAACCAGTTGCCCTGTTTTCCTTTTCTTTTCTGTTAATGCAAGTGGACAGTTTTGTGGT GTTGCTGAGATGATTGGTCCAGTTGATCTAAAGAAGGATATGGATTTTTGGCAGCAAGATAAATGGTCGGGGAGTTTCCCAGTGAAGTGGCATATGATTA AAGACGTACAGAATACCAGCTTTCGGCACATCATCTTAGAGAACAATGAACATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGGTACTGCTTAAACA GGGTCTCCAAATGCTGAAGATTTTCAAGTGTCATATTGTCGATACCTCTCTGCTTGATGACTTCATGTACTATGAGAACCGACAGAGGATCATGCAACAA GAGAAATCCCGGTACCTGAGTAAAAGTTTTGGAACTCCATTTCTAGCAGCTGCATTAGCTCCCACGCCCAAGCTAAACAGTCGAGTTGGCTTATCATCAA TTAAAGAAGAGAAAGCTGTGGTCGAGAATGCTTCAAATAGCTTGAAGGAAACCGTTGTGTCCGCTACTGCAAAAATCCCTTTGAAATCTGAGTCAACCAG CGACCAAAGTCAGTTGGACAAAGGAGTTGGTAATTACGTAGCATCCACGGCTTTGAAGATTGGCTCGCTAAGTATAAATCCATCCAAGCCACTATCTTCT GCAAGTCTGAATGATGATGTTCCAGCAGCTCCAGCAGCTGTTAGCAAAGCGGTTTATGTTGTAACGATAGGGTCAGTGCCTGTGAAGGTGAACGGAGTTT CTGATGCTTCTCCTCGGGTTCTAACGTTTGGCACGGTGCCACTTGATACAAACACTTTGCCAGTGAGAAAAGGAGGGCCTGGTTCGGTAAAACGTGTGTG CTGA
AA sequence Show only first row Show all	>Lus10018343 pacid=23179292 polypeptide=Lus10018343 locus=Lus10018343.g ID=Lus10018343.BGIv1.0 annot-version=v1.0 MHNGGAPEFVVDQGMYYPTATNYGYYCTGFESPGEWEDHHGIFGVDGPEVQYAGAQTENLRYVCYTPSYGYAQSSYNPYNPYIPGAMMGVDDPYLGAQQY YALPPYQDSMSSAGYIPYVVEQDMVPTNLVDQLPDAGIVYADEQGGRTSKQGPTSAAYSRNPSKSSANQTQSFSRTSEGPKPNVGSSKYSVVHENASSGR FQAPASLVLQGRNASGTAHTVDNTLKVKAPPLRDQLKFALPVNNSFTDFGSESHLRPLDKHWSNIQAGRTFNDVNGCQEALGEQNRGPRTTRSENQLAVK SYSTRIGGSNAEGSIIIHTDRYNRDDVQIDFSFAKFFVIKSYSEDDVHKSIKYNVWSSTLHGNKKLQSAYEDAQKIAAEKATSCPVFLFFSVNASGQFCG VAEMIGPVDLKKDMDFWQQDKWSGSFPVKWHMIKDVQNTSFRHIILENNEHKPVTNSRDTQEVLLKQGLQMLKIFKCHIVDTSLLDDFMYYENRQRIMQQ EKSRYLSKSFGTPFLAAALAPTPKLNSRVGLSSIKEEKAVVENASNSLKETVVSATAKIPLKSESTSDQSQLDKGVGNYVASTALKIGSLSINPSKPLSS ASLNDDVPAAPAAVSKAVYVVTIGSVPVKVNGVSDASPRVLTFGTVPLDTNTLPVRKGGPGSVKRVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48110		ECT7	evolutionarily conserved C-ter...		Lus10018343 [exp]	0	1
AT3G19870			unknown protein		Lus10012903 [exp]	3.9	0.8837
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	4.5	0.8835
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	8.7	0.8811
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10039784 [exp]	8.9	0.8506
AT1G79090			unknown protein		Lus10031788 [exp]	9.2	0.8629
AT4G01400			unknown protein		Lus10002677 [exp]	10.0	0.8739
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	12.7	0.8549
AT3G19870			unknown protein		Lus10030556 [exp]	13.0	0.8657
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	18.0	0.8457
AT1G35660			unknown protein		Lus10006047 [exp]	21.5	0.8113

Compare expression of checked genes

Lus10018343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.