Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11650 421 / 2e-146 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G54900 397 / 1e-137 ATRBP45A RNA-binding protein 45A (.1) AT4G27000 394 / 6e-136 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G19350 352 / 4e-119 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G19130 338 / 1e-113 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 337 / 7e-113 ATRBP47A RNA-binding protein 47A (.1) AT1G47500 328 / 1e-109 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 319 / 3e-106 ATRBP47C RNA-binding protein 47C (.1.2) AT1G54080 127 / 9e-33 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 126 / 2e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002063 [exp] 465 / 2e-164 AT4G27000 275 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031844 [exp] 355 / 1e-120 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 355 / 3e-120 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012070 [exp] 353 / 6e-120 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10021754 [exp] 347 / 6e-117 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10012071 [exp] 333 / 3e-113 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10014029 [exp] 328 / 4e-111 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10019889 [exp] 320 / 7e-108 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10027911 [exp] 307 / 3e-103 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G017200 [exp] 477 / 1e-168 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G423400 [exp] 419 / 3e-145 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G138400 [exp] 409 / 5e-142 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G054400 [exp] 372 / 2e-127 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G143400 [exp] 362 / 7e-123 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 358 / 2e-121 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 358 / 2e-121 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 345 / 1e-116 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.006G279600 [exp] 140 / 1e-37 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.018G002300 [exp] 137 / 3e-36 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10018345 pacid=23162209 polypeptide=Lus10018345 locus=Lus10018345.g ID=Lus10018345.BGIv1.0 annot-version=v1.0 ATGATGATGGTGCCTCAGGCTCCTCAGTCTCAGCATCCTCCTGCCGCTATGTGGAATAACCAGCAGCCTCAGGCGATGCCTCCACAGCAGCAGCAGCAGC AGCAGCAGCAAGCTCAGCAAGGACTGTCCGGCGGCAGTGGTGATGAGATTCGAACGTTGTGGATCGGCGACTTGCAGTACTGGATGGACGAGAACTATCT GGCTAGCTGCTTTTCTCAGACTGGCGAGGTTGCTTCTGTGAAAGTGATTCGCAATAAGCAGAGCGGACAGATGGAAGGGTACGGGTTTATGGAGTTTACC AGCCACGCTTCCGCAGAGAGGATACTGCAGACATACAATGGCAACCCTATGCCTAATGGCGAGCAGAACTTCAGGTTGAACTGGGCTTCTTATGGAGCTG GTGAGAAGCGTGATGATGGTCCTGAGTTCACCATATTTGTGGGGGACTTAGCTGCAGATGTTACGGACTACACTCTCCAGGAGACGTTCAGAATCCACTA TCCATCTGTGAAAGGAGCTAAAGTTGTGATCGACAAGCTAACTGGACGGACAAAGGGTTATGGGTTTGTGCGGTTCAATGATGAAGGTGAACAAATGCGT GCAATGACTGAGATGAACGGAGCTTTCTGTTCATCTAGACCTATGCGGATTGGAGTAGCATCAAACAAGAAAACAATGGCTCCAAGAGCTTCGTATCAGA ATTCCCCAACTCCAAAGGATAACGAGAATGATCCAAATAATACAACTAGATTTGTTGGTAATTTGGATTCAAATGTTACTGATAACCATTTGAGAGAACT TTTTAGCCAATATGGCCAATTGGTACATGTGAAGATACCAGCCGGCAAAAGATGTGGCTTCATTCAGTATGCCAACAGGAGCTGTGCTGAGGAAGCATTG AATAGGTTGAATGGAGCTGAGGTTGGCGGACAAAGTATTCGGCTATCGTGGGGACGCAATTCTTCAACCAAACAGTCAGAGTCTGAAGGTGGAAACCAGG GGAATGGGGAGGCTGCCGGTGGTGCCGGGTACTATGGGTATACACAAGGTTACGAGAACTACGGGTATGCGCAAGCTCCACCGGCGCAGGACCCGAACAT GTACTATGGAGGCTATCCTGCTGGCTACGCCAATTATCAACAACAGCCACCCTAG
AA sequence Show only first row Show all	>Lus10018345 pacid=23162209 polypeptide=Lus10018345 locus=Lus10018345.g ID=Lus10018345.BGIv1.0 annot-version=v1.0 MMMVPQAPQSQHPPAAMWNNQQPQAMPPQQQQQQQQQAQQGLSGGSGDEIRTLWIGDLQYWMDENYLASCFSQTGEVASVKVIRNKQSGQMEGYGFMEFT SHASAERILQTYNGNPMPNGEQNFRLNWASYGAGEKRDDGPEFTIFVGDLAADVTDYTLQETFRIHYPSVKGAKVVIDKLTGRTKGYGFVRFNDEGEQMR AMTEMNGAFCSSRPMRIGVASNKKTMAPRASYQNSPTPKDNENDPNNTTRFVGNLDSNVTDNHLRELFSQYGQLVHVKIPAGKRCGFIQYANRSCAEEAL NRLNGAEVGGQSIRLSWGRNSSTKQSESEGGNQGNGEAAGGAGYYGYTQGYENYGYAQAPPAQDPNMYYGGYPAGYANYQQQPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11650		ATRBP45B	RNA-binding (RRM/RBD/RNP motif...		Lus10018345 [exp]	0	1
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	9.8	0.8422
AT2G24530			unknown protein		Lus10020146 [exp]	9.9	0.8202
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000951 [exp]	13.4	0.7966
AT1G52310			protein kinase family protein ...		Lus10040381 [exp]	16.4	0.8141
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10005264 [exp]	19.6	0.8158
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10015319 [exp]	22.2	0.7756
AT5G35753			Domain of unknown function (DU...		Lus10012334 [exp]	27.6	0.7977
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10026612 [exp]	29.0	0.8068
AT3G11640			unknown protein		Lus10016964 [exp]	30.2	0.7941
AT3G11640			unknown protein		Lus10016965 [exp]	30.6	0.7879

Compare expression of checked genes

Lus10018345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.