Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21870 118 / 4e-35 HSP20-like chaperones superfamily protein (.1) AT1G53540 72 / 7e-17 HSP20-like chaperones superfamily protein (.1) AT1G07400 69 / 2e-15 HSP20-like chaperones superfamily protein (.1) AT1G59860 66 / 2e-14 HSP20-like chaperones superfamily protein (.1) AT5G12030 61 / 2e-12 AT-HSP17.6A heat shock protein 17.6A (.1) AT5G12020 61 / 3e-12 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G37670 57 / 3e-11 HSP15.7CI HSP20-like chaperones superfamily protein (.1) AT3G46230 54 / 7e-10 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT2G29500 53 / 2e-09 HSP20-like chaperones superfamily protein (.1) AT1G54050 52 / 2e-09 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007666 [exp] 255 / 3e-89 AT4G21870 122 / 2e-36 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 66 / 6e-14 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 66 / 8e-14 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 58 / 3e-11 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10040723 [exp] 57 / 9e-11 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 55 / 4e-10 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 53 / 2e-09 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 53 / 2e-09 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 53 / 2e-09 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G001600 [exp] 143 / 7e-45 AT4G21870 155 / 1e-49 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 73 / 5e-17 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 71 / 3e-16 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 71 / 4e-16 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 70 / 8e-16 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 69 / 1e-15 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 69 / 1e-15 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 69 / 2e-15 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187202 [exp] 68 / 3e-15 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 66 / 3e-14 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10018346 pacid=23162100 polypeptide=Lus10018346 locus=Lus10018346.g ID=Lus10018346.BGIv1.0 annot-version=v1.0 ATGGATTTCTCTCCCTATCATTCGTCTCCATGGCAATATCTCATTGCTCCCACCGGCGGCGTTCCCCATTCCTTAGCTGTCCCTGCCAATTACGTCCACT GGACTCAGAACCCCAACTCCCAGATTTTCTCCGCCGACATCCCCGGGGTGAGGAAAGAGGATATAAGAGTGGAGGTGGAGAACTCCAGATATCTGATTAT CTGGACGGACGGGTCAAATATCCCGCCGGAGAGGAGTTTCATGAGGAAATTCCGGCTGCCGGACTTGGTCTACGTGGACGGGATATCAGCTGCGTACGAA GATGGTGTGTTGAAGGTCACCGTCCCTAGAGCTTCCAGAAGGATAGGAGTCTTCATTCACCCCGCTGACGTGCCGGAAAGATTGGACTGTCTGGCTCCGG CTGCTTGA
AA sequence Show only first row Show all	>Lus10018346 pacid=23162100 polypeptide=Lus10018346 locus=Lus10018346.g ID=Lus10018346.BGIv1.0 annot-version=v1.0 MDFSPYHSSPWQYLIAPTGGVPHSLAVPANYVHWTQNPNSQIFSADIPGVRKEDIRVEVENSRYLIIWTDGSNIPPERSFMRKFRLPDLVYVDGISAAYE DGVLKVTVPRASRRIGVFIHPADVPERLDCLAPAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21870			HSP20-like chaperones superfam...		Lus10018346 [exp]	0	1
AT3G59310			Eukaryotic protein of unknown ...		Lus10004060 [exp]	1.7	0.8387
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10033523 [exp]	2.0	0.8054
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10029090 [exp]	6.0	0.6737
AT3G19620			Glycosyl hydrolase family prot...		Lus10002127 [exp]	10.4	0.7851
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10005600 [exp]	11.5	0.6157
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	13.4	0.7621
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10036924 [exp]	14.4	0.7138
					Lus10021851 [exp]	16.3	0.7591
					Lus10012440 [exp]	17.8	0.7591
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	19.3	0.7591

Compare expression of checked genes

Lus10018346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.