Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04860 419 / 2e-150 DER2.2 DERLIN-2.2 (.1) AT4G21810 409 / 2e-146 DER2.1 DERLIN-2.1 (.1) AT4G29330 151 / 6e-45 DER1 DERLIN-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006771 [exp] 449 / 2e-162 AT4G04860 437 / 6e-158 DERLIN-2.2 (.1) Lus10020053 [exp] 449 / 2e-162 AT4G04860 437 / 1e-157 DERLIN-2.2 (.1) Lus10007664 [exp] 394 / 4e-141 AT4G04860 375 / 1e-133 DERLIN-2.2 (.1) Lus10034990 [exp] 149 / 1e-43 AT4G29330 347 / 2e-121 DERLIN-1 (.1) Lus10012934 [exp] 143 / 4e-41 AT4G29330 347 / 2e-120 DERLIN-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000900 [exp] 431 / 2e-155 AT4G04860 410 / 5e-147 DERLIN-2.2 (.1) Potri.004G018200 [exp] 427 / 8e-154 AT4G04860 410 / 7e-147 DERLIN-2.2 (.1) Potri.006G153000 [exp] 132 / 1e-37 AT4G29330 355 / 7e-125 DERLIN-1 (.1) Potri.004G233200 [exp] 128 / 8e-36 AT4G29330 293 / 4e-100 DERLIN-1 (.1) Potri.004G233100 [exp] 128 / 1e-35 AT4G29330 293 / 8e-100 DERLIN-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF04511 [flax] [poplar] DER1 Der1-like family
Representative CDS sequence Show only first row Show all	>Lus10018347 pacid=23162186 polypeptide=Lus10018347 locus=Lus10018347.g ID=Lus10018347.BGIv1.0 annot-version=v1.0 ATGGCTCAGGCAGTTGAGGAATGGTATAAGCAGATGCCTGTCATCACTCGTTCGTACCTCACAGCGGCCATCGTCACCACCATCGGCTGCTCCCTTGATA TAATAGCTCCTTCCAATCTGTACTTGAATCCGAGGCTTGTGGTGCAGAAGTATGAGTTTTGGCGCCTCGTCACCAACTTCCTCTACTTCCGGAAATTGGA TTTGGACTTCATGTTCCACATGTTTTTCCTTGCCCGGTACTGCAAGCTTCTGGAGGAGAACTCCTTCAGAGGAAGGACAGCAGATTTCTTCTATATGATT CTCTTTGGTGCATCTGTTTTAACCGGCGTTGTTCTTGTTGGTGGGATGATCCCATACCTGTCCGAGTCATTTGCTAAAATCGTGTTCCTCGGCAACTCCT TGACTTTCATGATGGTTTATGTCTGGAGCAAGCAAAATCCTTTTATCCATATGAGTTTCTTGGGACTGTTCACTTTCACAGCAGCTTATTTACCATGGGT TCTACTCGGATTCTCTGTCCTTGTTGGAGCTAGTGCATGGGTGGATCTGCTGGGGATGATAGCTGGACACGCATACTACTTCCTGGAAGATGTGTATCCC CGGATGACTGGTCGACGGCCCCTGCGAACCCCGTCATTCATTAGAGCTTTGTTCGCAGACGACCCTGTTGTGGTAGCACGACCGGCCAATGTAAGATTTG CGCAGCCAGCTGCACCAGAGCTCCACCAGGATTGA
AA sequence Show only first row Show all	>Lus10018347 pacid=23162186 polypeptide=Lus10018347 locus=Lus10018347.g ID=Lus10018347.BGIv1.0 annot-version=v1.0 MAQAVEEWYKQMPVITRSYLTAAIVTTIGCSLDIIAPSNLYLNPRLVVQKYEFWRLVTNFLYFRKLDLDFMFHMFFLARYCKLLEENSFRGRTADFFYMI LFGASVLTGVVLVGGMIPYLSESFAKIVFLGNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGMIAGHAYYFLEDVYP RMTGRRPLRTPSFIRALFADDPVVVARPANVRFAQPAAPELHQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10018347 [exp]	0	1
AT1G15190			Fasciclin-like arabinogalactan...		Lus10015081 [exp]	3.7	0.8254
AT3G27520			unknown protein		Lus10003664 [exp]	4.0	0.7933
AT2G32600			hydroxyproline-rich glycoprote...		Lus10022607 [exp]	4.7	0.8254
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	8.1	0.8247
AT3G61530		PANB2	Phosphoenolpyruvate carboxylas...		Lus10010142 [exp]	12.4	0.8155
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015778 [exp]	12.5	0.8215
AT2G45590			Protein kinase superfamily pro...		Lus10036534 [exp]	13.4	0.7803
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10022876 [exp]	22.0	0.8122
AT3G20390			endoribonuclease L-PSP family ...		Lus10040074 [exp]	23.7	0.8099
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	27.0	0.7408

Compare expression of checked genes

Lus10018347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.