Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21790 400 / 5e-142 ATTOM1, TOM1 tobamovirus multiplication 1 (.1) AT2G02180 309 / 1e-105 TOM3 tobamovirus multiplication protein 3 (.1) AT1G14530 280 / 2e-94 THH1 TOM THREE HOMOLOG 1, Protein of unknown function (DUF1084) (.1), Protein of unknown function (DUF1084) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007663 [exp] 493 / 3e-178 AT4G21790 464 / 4e-167 tobamovirus multiplication 1 (.1) Lus10006770 [exp] 468 / 1e-168 AT4G21790 463 / 1e-166 tobamovirus multiplication 1 (.1) Lus10020054 [exp] 461 / 9e-166 AT4G21790 457 / 2e-164 tobamovirus multiplication 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G018100 [exp] 426 / 4e-152 AT4G21790 463 / 2e-166 tobamovirus multiplication 1 (.1) Potri.011G001000 [exp] 422 / 2e-150 AT4G21790 427 / 2e-152 tobamovirus multiplication 1 (.1) Potri.010G097900 [exp] 310 / 3e-106 AT2G02180 431 / 1e-153 tobamovirus multiplication protein 3 (.1) Potri.008G144400 [exp] 308 / 2e-105 AT2G02180 425 / 3e-151 tobamovirus multiplication protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06454 [flax] [poplar] DUF1084 Protein of unknown function (DUF1084)
Representative CDS sequence Show only first row Show all	>Lus10018348 pacid=23162135 polypeptide=Lus10018348 locus=Lus10018348.g ID=Lus10018348.BGIv1.0 annot-version=v1.0 ATGGAGTTCGTCGGATTAGCTGGCAGCTGGTGGAATGAGATCAACGAGTCTACTCAGTGGCAGGACGGGATTTTCTACACACTTTCCGGTGCTTTCTCTC TCGTCTCGTTGATTGCCTTGATTCAACTGATTAGGATCGAGTTGAGAGTGCCGGAGTATGGCTGGACCACTCAGAAAGTTTTCCACCTTATGAACTTCAT TGTTAATGGAGTACGAGCCCTCGTGTTTGGCTTTCACGGCCAAGTGTTCGGTTTGCATCCCAAGGTCCTTACATTGCTAGCGTTAGATTTACCAGGGCTA TTGTTCTTCTCTACGTACACCCTTCTAGTACTGTTTTGGGCTGAGATATATCATCAGGCAAGGAGTTTGCCAACAGATAAGCTAAGGGTTTTCTACATCT CAACAAATGGTGTAATCTACTGCATCCAGGCAATCATCTGGGTTTACCTATGGGTTCATGACACCAGTGTTGTGGAGCTGATAGGGAAGATATTCATTGC AGTGGTATCAATTGTTGCTGCATTAGGGTTTCTGCTCTATGGAGGAAGACTGTTTTTCATGCTCAGACGCTTCCCGATTGAATCCAAGGGGAGAAGGAAG AAGCTCCATGAGGTTGGGTCAGTTACAGCAATTTGTTTCACATGCTTCCTTATCAGATGTTTTGTGGTCCTTCTATCTGCTTTCGACAAAGATGCATCTC TCGAAGTTTTGGATCATCCGGTTTTGAACTTGATCTATTACACGCTGGTAGAGATCCTACCCTCAGCTTTGGTCCTCTTCATCCTCCGAAAGTTGCCTCC GAAACGAGTATCAGCTCAGTACCATCCAATCCGCTAG
AA sequence Show only first row Show all	>Lus10018348 pacid=23162135 polypeptide=Lus10018348 locus=Lus10018348.g ID=Lus10018348.BGIv1.0 annot-version=v1.0 MEFVGLAGSWWNEINESTQWQDGIFYTLSGAFSLVSLIALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRALVFGFHGQVFGLHPKVLTLLALDLPGL LFFSTYTLLVLFWAEIYHQARSLPTDKLRVFYISTNGVIYCIQAIIWVYLWVHDTSVVELIGKIFIAVVSIVAALGFLLYGGRLFFMLRRFPIESKGRRK KLHEVGSVTAICFTCFLIRCFVVLLSAFDKDASLEVLDHPVLNLIYYTLVEILPSALVLFILRKLPPKRVSAQYHPIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10018348 [exp]	0	1
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	3.2	0.9716
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	3.5	0.9759
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	5.5	0.9693
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	7.5	0.9715
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	7.7	0.9711
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	8.5	0.9673
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	9.2	0.9660
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10004222 [exp]	10.2	0.9644
AT5G41810			unknown protein		Lus10003901 [exp]	11.6	0.9697
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	11.7	0.9690

Compare expression of checked genes

Lus10018348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.