Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61850 1693 / 0 phospholipases;galactolipases (.1.2) AT4G04870 320 / 5e-98 CLS cardiolipin synthase (.1) AT4G21780 51 / 3e-07 unknown protein AT2G39290 54 / 7e-07 PGP1, PGS1, PGPS1 phosphatidylglycerolphosphate synthase 1 (.1) AT3G55030 52 / 1e-06 PGPS2 phosphatidylglycerolphosphate synthase 2 (.1) AT2G26560 51 / 6e-06 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT1G79620 48 / 7e-05 Leucine-rich repeat protein kinase family protein (.1) AT4G37070 47 / 9e-05 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37060 46 / 0.0002 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT1G12970 45 / 0.0006 PIRL3 plant intracellular ras group-related LRR 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007661 [exp] 2557 / 0 AT1G61850 1855 / 0.0 phospholipases;galactolipases (.1.2) Lus10007662 [exp] 392 / 3e-125 AT4G04870 304 / 1e-103 cardiolipin synthase (.1) Lus10023471 [exp] 58 / 5e-08 AT2G39290 332 / 2e-113 phosphatidylglycerolphosphate synthase 1 (.1) Lus10009340 [exp] 53 / 2e-06 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10001977 [exp] 50 / 5e-06 AT2G39290 310 / 1e-106 phosphatidylglycerolphosphate synthase 1 (.1) Lus10040348 [exp] 51 / 9e-06 AT2G39290 301 / 3e-100 phosphatidylglycerolphosphate synthase 1 (.1) Lus10030301 [exp] 49 / 1e-05 AT2G39290 311 / 2e-107 phosphatidylglycerolphosphate synthase 1 (.1) Lus10021899 [exp] 47 / 0.0002 AT1G04210 609 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041180 [exp] 46 / 0.0003 AT1G04210 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000200 [exp] 1878 / 0 AT1G61850 1796 / 0.0 phospholipases;galactolipases (.1.2) Potri.004G018700 [exp] 1867 / 0 AT1G61850 1781 / 0.0 phospholipases;galactolipases (.1.2) Potri.004G018300 [exp] 345 / 9e-107 AT4G04870 351 / 1e-120 cardiolipin synthase (.1) Potri.004G018600 [exp] 53 / 9e-08 AT4G21780 88 / 2e-23 unknown protein Potri.010G214900 [exp] 55 / 1e-07 AT3G55030 312 / 1e-108 phosphatidylglycerolphosphate synthase 2 (.1) Potri.002G128300 [exp] 55 / 3e-07 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.011G000400 [exp] 51 / 5e-07 AT4G21780 74 / 7e-18 unknown protein Potri.010G081400 [exp] 55 / 7e-07 AT1G04210 1212 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G046700 [exp] 52 / 2e-06 AT3G55030 316 / 5e-108 phosphatidylglycerolphosphate synthase 2 (.1) Potri.001G280500 [exp] 50 / 1e-05 AT2G30105 503 / 1e-179 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase CL0323 [flax] [poplar] PF01066 [flax] [poplar] CDP-OH_P_transf CDP-alcohol phosphatidyltransferase CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10018349 pacid=23162185 polypeptide=Lus10018349 locus=Lus10018349.g ID=Lus10018349.BGIv1.0 annot-version=v1.0 ATGTCTTGGGGATTAGGATGGAAGCGGCCGTCGGAGATCTTCCGCTTAAGTCTCAACTATGGCACGGAGGAGTCCTGGGAGGATCCAATCCGTACATCGA GCTCCTCATCGTGTTCTTCTTCGTCAACGATACAGCCGCTGGATCAGGATGGTGGGTTCCGCGTCGATTTGGATTGGACGGCCGGAGAAGATGAGGATCA GTTGGCCCTGAGGTTGCAGTCGCAACTCACGGTGGCGCTCCCGATGCCGCAGGATTGTGTGACGGTGGAATTGGCGACGCAAGATGAGGAAGGAACGGAG GAAGGCAATGTCAGAGTGGAGATGAATGTGGTGAAGAGGAGGGAGCCGTTGAGAGGGATCACGATCTCGAAGGCCGGCTCTGGACAGCAGAGCGATGGCA TCGGCGTTTTGACGAGATTACTGAGGTCTAATTTAGCTTCTGCTGGAATTGGGGATGGTTCTGATTTTTCTTGTGCCGATCACTGGAAGACTGTCACCTT GCTTAACCTCTGCGGCTGTGGTTTGGCGACATTGCCGCCTGAGCTTCTGCAATTGCCAACCCTCGAGAAACTCCTTCTTGACAACAATAGACTTACTTTT TTGCCACCTGAGCTTGGGGAGCTGAAAACTTTGAAAGTTCTCAGTGTTGATTACAACTTGTTGGTTTCTGTTCCTGTGGAACTGAGGCAGTGTGTTCAAC TCGTTGAGTTGTCATTGGAACATAACAAGCTTGTCCGTCCTCTTCTTGATTTCAGGGCCATGGCCGAGTTACAAATTCTTAGGCTATTTGGCAACCCTCT GGAATTTCTTCCCGAGATTTTACCCCTCCACAAACTTCGCCACTTGACCCTTGCAAATATCAGGATTGTTTCTGATGAAAATTTAAGATCTGTGACTGTG CAGATAGAGGGGGAGAACAATTCTTACTTTGGAGCATCTAGACATAAGTTAAGTGCGTTTTTTTCTCTTATATTCCGCTTCTCATCATGCCATCACTCTC TCCTAGCATCTGCACTGGCAAAGATAGTGCAAGACCAAGGTAACCGTGCAGTAATTGGTAAAGATGAGAATGCAGTGCGACAGCTCATTAGCATGATCAG TAGCGACGACCGTTATGTGGTTGAGCAAGCATGTTCTGCACTGTCCACTCTTGCTGGAGATGTTTCTATGGCAATGCAGTTGATTAAATGCGATATCATG CAGCCTATTGAAACAGTGCTAAGATCTGTTTCCCAGGAAGAATTGCAAAAGTCGGCTTTGTTTGTGGTGGGTAATCTGGCGTTCTGCTTGGAAAATAGGC GTATTTTGGTTACTTCTGAAAGTCTGCGGGACTTGCTATTGCGGTTGACAGTTACATCTGAACCTCGTGTGAACAAAGCTGCTGCTCGTGCCTTGGCCAT TCTTGGAGAGAATGAAAATTTGAGACGTGCCGTAAAGGGAAGACCTGTGACCAAGCAAGGACTGCGTATTCTATCAATGGATGGAGGTGGAATGAAAGGT CTGGCTACCGTACAGATTCTCAAGGCAATTGAGAAGGGAACTGGAAAACGAATACATGAGCTGTTTGACCTTATATGCGGCACATCAACGGGTGGAATGT TGGCTGTTGCTCTTGGTATAAAGCTAATGTCCCTGGATCAATGCGAGGAAATATACAAAAATCTTGGGAAACTTGTGTTTGCTGAACCTGTGCCCAAGGA TAACGAAGCTGCATCATGGAGAGAAAAGTTAGATCAGCTTTACAAAAGTTCGTCCCAGAGTTTTAGAGTTGTCGTACACGGATCCAAACACAGCGCAGAT GAGTTTGAGAGACTGTTAAAGGAAATGTGTGCTGATGGGGATGGAGATCTATTGATAGACTCAGCAGTGAAATGCATTCCAAAAGTTTTTACCGTCTCAA CTTTGGTTAGCACAATGCCAGCTCAGCCATTTATATTTCGTAACTATCAGTACCCAGTTGGGACACCAGAAGTGCCAACCACTCCTACAGAGGGATCTGG TATCACTGTGTTAGGATCACCTTTTGCTGGTAGCCAAATTGGATACAGGCGCAGTGCTTCTGTTGGGAGTTGTAAACACCATGTTTGGCAAGCAATTAGA GCATCGTCTGCTGCACCGTATTATCTTGATGACTATTCTGATGACACAAACCGCTGGCAAGATGGTGCTATTGTTGCGAATAATCCTACCATATTTGCCA TAAGAGAAGCACAGCTTCTTTGGCCTGACACAAGAATCGACTGTCTTGTTTCGGTTGGGTGCGGTTCTGTTCCAACAAAGCCCCGGAAAGGTGGTTGGCG CTATCTAGACACTGGGCAAGTTCTTATCGAAAGTGCATGCTCTGTGGACCGAGTGGAAGAAGCCTTAAGTACATTACTCCCCATGCTTCCGGAGATACAG TATTTTCGTTTCAACCCAGTTGATGAACGCTGCGATATGGAACTGGATGAGACTGACCCTGCTGTATGGCTAAAGTTGGAAGCATCAGTTGAAGAATATA TCCTAGAGAGTGCTGAAGCTTTCAAGAATGTCTGTGAGAGACTGGTGTTGCCATTCCAAAATGATGACAAGCTCTCAGACCACGTGAAAACTCAGCAACT TCCTAGAGTAAAGACGTTCACTACTGGTGGGAGTGGCCCCACTCTCGGTTGGAGGTGTAATGTTCTACTTGTTGAAGCTCTTCACAGTCCTGATTCAGGA AGAGTTATGCACCACGCCCGGGCACTCGAGTCGTTTTGTGCACGCAACAGCATAAAAATATCTCATGTTCATAGTACATCTGGAATTTCAAAGACGGTAC CTCCCACAATCCCATCACCCTTCACCTCACCGCTAATCACCGGAAGCTTTCCTTCAAGCCCACTTCTATATAGTCCCGACTTTGCCTCCCAAAGAATGGG TCGAATCGAAATGGTTCCACCTTTAAGCTTGGATGGAACTCAGTCTCTAAGAGGGGGATCATCTCCACCAATGTCCCCTGCCACACACAGACAGTTCTCT TTACCCGTTCGATCATTGCATGAAAAGCTGCAGCATGCACCACAAGTGGGGATCGTGCACTTAGCCCTTCAGAATGATTCATCTGGCTCGATTTTAAGTT GGCAGAATGACGTATTTGTGGTTGCTGAACCTGGAGAACTCGCTGACAAGTTTCTACAGAGTGTGAAGCTAAGTTTATTGTCCATGATGCGGTGCCACCA ACGGAAGGTAACATCGTTCCTTTCGAAGATATCAACAGTTGCTGATCTCGTTAGCTCCAGACCGTACTTCCAAGTTGGAAATGTCGTCCACCGTTATATT GGCCGGCAGACACAGGTGATGGAAGATGACCAAGAAATTGCAGCATACATGTTTCGAAGAACGGTTCCTTCAATTCATTTGACACCTGATGATGTCCGAT GGATGGTCGGAGCTTGGAGAGACCGGATCATTATCTGCACGGGAACTTATGGTCCTTCCCAGACGCTAATCAAAGCCTTCATGGACTCAGGTGCAAAAGC CGTCATATGTCCTTCCGCAGACCCAATGGACATTCCGGTGACAGCCGCCAGCTTGTCAGGTGACTTCAACTTCATGGAGAACGGTGGGAAGTTCGAGATC GGAGAAGAGGAAGCAGAAGACGAAGATATCGAGCCTCCCAGTCCGGCAAGCGACTGGGAGGACAGCGATCCAGAGAAGGGGTGTGGGGGGTCAAACTCGA TGGGGTTCTGGGACGACGACGAAGAGAAGCTAGCTCAGTTTCTAAGTCAGGTGTATGATTCGTTGTTCCGGGAAGGTGCCAGCGTGGATGTAGCCTTACG TACTGCTCTGGCTTCGCATCGTAGACTGAGGTATTCATGCCATCTCCCCGGTTTGAAACCAACAGCCTGCAGCAGCTCCACGTCAGTACTGAATCTCCCT GACCAGATGATGTCTGCTGCAGCAGCAGCTCCAGTTGCGGTCGGGACACGTGGCACGGTTGGTTCCCTTGTAAGGAAAGAGATCGACTACTTTACCAACT TGGACACGGCCGAAAGCACTAGTGCTCGGAAATTTGCTGCTCCAGGGAGCATTAATGGTGGTGGTACTGCTACGTCTTCTTCTAGAAGATTTTGGCCGTG GAGAATTAGCTGGAGAAGAAAGAAATGCGGCGGCAGTGGAGGCGGGAGCAAGTTGCTACATCCGGGGATGTGCGCCACCGTGGATGTTGGTGATTCTGGT GTCGGGATCTCCGGCCGAAAGAAGGAAAAGAATGCGCCATCAATGGTGATCTCCAGATCGTTTAGCTCTCTGACGAGGAAGCACAACCCTAACCACCACC TCCTTCCCTTCCTCGTCACCCACGCCGGCGATTCTCCAAGAACCTTCATCACAGCTTCAACATCTACTTTCCCTCCTTCTCCCTACGCTCTCCTTCCTTT CCCGTCTTCTCCTTTTCCCCAACCTCACCGGTTCCTCTTCCCGCTCTCCAAATGGATCGCAGCCGCTCCGCTTCAAGGCCCTCTGTTCCTCTCATCGCCG CCGTGGAAGCTGCTGCAGTCCTCGACTCCGCTTCATCTGCGCGGGAAGGGCGCCATTGCGCGGAAGCGAGCCGAGGCGTTGAAAAGCTTGAATTTGAGGC TCAATTTGCTTCGGAATCGGATGGCTGCCACTGCGGACACGACGTGTGGCGGTGGAGTGACGGTGAATCGTGCAGCGGAGGCGGAGGAGGAGGAAGGCGG TGTTTGGGAGAGCTTCGTGAATTTGCCTAATTTTATCTCTGTCAGTCGTTTGGTGTCCGGGCCTTTCCTTGGATGGATGATTGCTAATGAGATGTATTCC GCTGCCTTTGTTGGCTTGGCAATCTCTGGAGCTAGTGATTGGCTTGATGGTTATGCTGCAAGAAAGATGGGGATCAATTCTGTAGTTGGTTCTTATCTTG ATCCTCTTGCTGACAAGGTTCTTATAGGATCAGTTGCTGTAGCCATGGTTCATATGGATCTTTTACACCCTGGACTAGTCGGATTAGTTTTATTTCGTGA TGTCGGACTGGTTGCTGCATCACTATATCATAGAGCTAACAGCTTGGGTTGGAAGTCGAATAGCTGGTCTGAATTCATAAACCTCAACGGATCCGGTGCC GAGAAGATCCAGCCTCTATTCATAAGCAAGGTGAATACAGTGTTCCAGCTGCTTTTGGTCGCGGCAGCCCTTCTTCAACCAGAGTTTGGAACAGAGCAGA CGCTAACATACGTAACATACTTGAGCTGGCTGGTGGCTTCGACGACAGCAGGTTCCACTGCAGCATACGGATTGAAATACTTCAACAACAGATCCTCGTT GCTGGCTAGGAAGTAG
AA sequence Show only first row Show all	>Lus10018349 pacid=23162185 polypeptide=Lus10018349 locus=Lus10018349.g ID=Lus10018349.BGIv1.0 annot-version=v1.0 MSWGLGWKRPSEIFRLSLNYGTEESWEDPIRTSSSSSCSSSSTIQPLDQDGGFRVDLDWTAGEDEDQLALRLQSQLTVALPMPQDCVTVELATQDEEGTE EGNVRVEMNVVKRREPLRGITISKAGSGQQSDGIGVLTRLLRSNLASAGIGDGSDFSCADHWKTVTLLNLCGCGLATLPPELLQLPTLEKLLLDNNRLTF LPPELGELKTLKVLSVDYNLLVSVPVELRQCVQLVELSLEHNKLVRPLLDFRAMAELQILRLFGNPLEFLPEILPLHKLRHLTLANIRIVSDENLRSVTV QIEGENNSYFGASRHKLSAFFSLIFRFSSCHHSLLASALAKIVQDQGNRAVIGKDENAVRQLISMISSDDRYVVEQACSALSTLAGDVSMAMQLIKCDIM QPIETVLRSVSQEELQKSALFVVGNLAFCLENRRILVTSESLRDLLLRLTVTSEPRVNKAAARALAILGENENLRRAVKGRPVTKQGLRILSMDGGGMKG LATVQILKAIEKGTGKRIHELFDLICGTSTGGMLAVALGIKLMSLDQCEEIYKNLGKLVFAEPVPKDNEAASWREKLDQLYKSSSQSFRVVVHGSKHSAD EFERLLKEMCADGDGDLLIDSAVKCIPKVFTVSTLVSTMPAQPFIFRNYQYPVGTPEVPTTPTEGSGITVLGSPFAGSQIGYRRSASVGSCKHHVWQAIR ASSAAPYYLDDYSDDTNRWQDGAIVANNPTIFAIREAQLLWPDTRIDCLVSVGCGSVPTKPRKGGWRYLDTGQVLIESACSVDRVEEALSTLLPMLPEIQ YFRFNPVDERCDMELDETDPAVWLKLEASVEEYILESAEAFKNVCERLVLPFQNDDKLSDHVKTQQLPRVKTFTTGGSGPTLGWRCNVLLVEALHSPDSG RVMHHARALESFCARNSIKISHVHSTSGISKTVPPTIPSPFTSPLITGSFPSSPLLYSPDFASQRMGRIEMVPPLSLDGTQSLRGGSSPPMSPATHRQFS LPVRSLHEKLQHAPQVGIVHLALQNDSSGSILSWQNDVFVVAEPGELADKFLQSVKLSLLSMMRCHQRKVTSFLSKISTVADLVSSRPYFQVGNVVHRYI GRQTQVMEDDQEIAAYMFRRTVPSIHLTPDDVRWMVGAWRDRIIICTGTYGPSQTLIKAFMDSGAKAVICPSADPMDIPVTAASLSGDFNFMENGGKFEI GEEEAEDEDIEPPSPASDWEDSDPEKGCGGSNSMGFWDDDEEKLAQFLSQVYDSLFREGASVDVALRTALASHRRLRYSCHLPGLKPTACSSSTSVLNLP DQMMSAAAAAPVAVGTRGTVGSLVRKEIDYFTNLDTAESTSARKFAAPGSINGGGTATSSSRRFWPWRISWRRKKCGGSGGGSKLLHPGMCATVDVGDSG VGISGRKKEKNAPSMVISRSFSSLTRKHNPNHHLLPFLVTHAGDSPRTFITASTSTFPPSPYALLPFPSSPFPQPHRFLFPLSKWIAAAPLQGPLFLSSP PWKLLQSSTPLHLRGKGAIARKRAEALKSLNLRLNLLRNRMAATADTTCGGGVTVNRAAEAEEEEGGVWESFVNLPNFISVSRLVSGPFLGWMIANEMYS AAFVGLAISGASDWLDGYAARKMGINSVVGSYLDPLADKVLIGSVAVAMVHMDLLHPGLVGLVLFRDVGLVAASLYHRANSLGWKSNSWSEFINLNGSGA EKIQPLFISKVNTVFQLLLVAAALLQPEFGTEQTLTYVTYLSWLVASTTAGSTAAYGLKYFNNRSSLLARK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61850			phospholipases;galactolipases ...		Lus10018349 [exp]	0	1
AT1G79570			Protein kinase superfamily pro...		Lus10031173 [exp]	1.0	0.9508
AT5G47490			RGPR-related (.1)		Lus10008520 [exp]	2.4	0.9430
AT2G27900			unknown protein		Lus10009613 [exp]	3.5	0.9291
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	4.2	0.9365
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	5.0	0.9293
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10022858 [exp]	6.7	0.9099
AT5G54200			Transducin/WD40 repeat-like su...		Lus10027671 [exp]	8.1	0.9021
AT1G19835			Plant protein of unknown funct...		Lus10024324 [exp]	8.4	0.9247
AT5G47490			RGPR-related (.1)		Lus10004721 [exp]	8.5	0.9047
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	9.6	0.9341

Compare expression of checked genes

Lus10018349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.