Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11600 628 / 0 CYP77B1 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) AT5G04630 383 / 2e-128 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT3G10560 378 / 3e-126 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT5G04660 376 / 1e-125 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) AT3G10570 375 / 5e-125 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1) AT1G64940 335 / 2e-109 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT1G64930 325 / 2e-105 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G64950 316 / 4e-102 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT2G12190 314 / 2e-101 CYP89A4 Cytochrome P450 superfamily protein (.1) AT3G03470 285 / 2e-90 CYP89A9 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007659 [exp] 994 / 0 AT1G11600 639 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10018351 [exp] 866 / 0 AT1G11600 662 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007658 [exp] 862 / 0 AT1G11600 663 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007660 [exp] 621 / 0 AT1G11600 706 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10034156 [exp] 415 / 1e-140 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10028654 [exp] 323 / 7e-105 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020353 [exp] 315 / 2e-101 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020360 [exp] 309 / 2e-99 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 298 / 5e-95 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019000 [exp] 749 / 0 AT1G11600 645 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Potri.004G018800 [exp] 666 / 0 AT1G11600 701 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Potri.008G025500 [exp] 412 / 8e-140 AT5G04660 761 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Potri.005G079600 [exp] 313 / 4e-101 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088018 [exp] 309 / 2e-99 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088086 [exp] 306 / 2e-98 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G087950 [exp] 306 / 2e-98 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088154 [exp] 302 / 7e-97 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.003G104600 [exp] 301 / 3e-96 AT1G64940 455 / 2e-156 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 292 / 6e-93 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10018350 pacid=23162207 polypeptide=Lus10018350 locus=Lus10018350.g ID=Lus10018350.BGIv1.0 annot-version=v1.0 ATGGAGCTTATAGACATCTCTCTAGCTTTCGCTGCCCTCGTCCTCCTCTCGGTATGGTGGCGCCGCTCATCCTCATTCGCCAAACTACCCCTCCCTCCCT CCGTCCCCGGTTGGCCGATCGTTGGAAACTTGTTCCAAGTCATCCTCAGCCGCCGTCACTTCACCTTCTTCATCCGTGATATCCGCAAAAAGCACGGCCA GATCTTCACCATGAACATGGGCCAGCGGACTATGGTGGTGGTCACCTCGCCGGAATTAATCCACGAGGCTCTAGTCCAGAGAGGATCCGAATTCGCCTCC CGCCCGCCTGACTCACCAATCAGGCTCGTCTTTAGCATTGGGAAGTGCGCTGTGAATTCCGCCGTTTATGGCCCGCTGTGGCGGGTCTTGAGGCGAAATT TTGTAACCGAGCTCATGAGCCCGGTCCGGGTTAGACAGTGTAGCTGGATCCGCGATTGGGCTTTGGAGAGCCATATGGGTCAGATTCAGTCTGATTTTAA AGAACTGGGTCATGTGGACGTGTTAAACGTGTGTCGATTCACTATGTGTCGGATCCTCGCATGCATCTGTTTCGGCGCGAAGATTTCTGAAGATTGGATC CATGACATCGACAATATAACGACGGAGGTGATGCTGATATGTACTCCTCACCTCCCAGATTTCTTCCCGATCCTAACGCCGTTGTTTGGGAAGCAAATGA GCAGGGCTAAAATGTTAAGGAAAAAACAAATGGAGTGTTTCCTTCCTTTGATCAGCAGTAGGAAGGCTTTTGTTGAGAAAGGTGAACAAGGCACAAACTT GGAGATGGTGAGCCCAATTGGTGCGGCCTACGTTGATTCTTTATTCGGGCTTGATGCTCCCGGTCGAGGCCCATTAGGCGAAGACGAGATGGTCACCCTA TGCAACGAAGTTTTTGTTGCCGGAATGGACACGAGCACCAGCGTTCTCCAATGGGCGTTCTTCGAATTGGTCCTGCAACAGTCGATTCAGCAGAAGCTCT ACGAAGAGATCGTTTCCCACGTCGGATCAGAAGGGCGAATCACAGAGGAACACGTGGAGAGGATGCCTTACCTGACCGCAATAATCAAGGAGACCCTGAG GATGCACTCCCCAGCGCACTTCACGCTCTCCCACGCACCGACGGTGGAGACGGAGCTAGGCGGGTACAGGATTCCGGCTGACGTAAGTGTGGAGTTTTAC GTCGAGTGGATGACAGAGGATCCGACCGTGTGGAAGGATCCGGATGTGTTCCGACCCGAGAGGTTCTTGGACGGCGGGGATGGAGTTGCGGTGGATATGA CGGGGACGAAAGGAGAAGTGAAGATGCTTCCATTCGGGGCGGGTCGGAGGACTTGTCCGGGTCTGTCGTTGGGGGTTTTGCACGTGAACTTGATGCTGGC AAGGATGGTTCAGGCTTTCAAGTGGGTGGCCTCACCGGATTACCCGCCCGACCCAACCGAGGCTTTTAACTTCACTGTTGTGATGAAGAACCCGCTTAAG GCGGTGATCGTGCCTCGAGGGTGA
AA sequence Show only first row Show all	>Lus10018350 pacid=23162207 polypeptide=Lus10018350 locus=Lus10018350.g ID=Lus10018350.BGIv1.0 annot-version=v1.0 MELIDISLAFAALVLLSVWWRRSSSFAKLPLPPSVPGWPIVGNLFQVILSRRHFTFFIRDIRKKHGQIFTMNMGQRTMVVVTSPELIHEALVQRGSEFAS RPPDSPIRLVFSIGKCAVNSAVYGPLWRVLRRNFVTELMSPVRVRQCSWIRDWALESHMGQIQSDFKELGHVDVLNVCRFTMCRILACICFGAKISEDWI HDIDNITTEVMLICTPHLPDFFPILTPLFGKQMSRAKMLRKKQMECFLPLISSRKAFVEKGEQGTNLEMVSPIGAAYVDSLFGLDAPGRGPLGEDEMVTL CNEVFVAGMDTSTSVLQWAFFELVLQQSIQQKLYEEIVSHVGSEGRITEEHVERMPYLTAIIKETLRMHSPAHFTLSHAPTVETELGGYRIPADVSVEFY VEWMTEDPTVWKDPDVFRPERFLDGGDGVAVDMTGTKGEVKMLPFGAGRRTCPGLSLGVLHVNLMLARMVQAFKWVASPDYPPDPTEAFNFTVVMKNPLK AVIVPRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018350 [exp]	0	1
AT3G52740			unknown protein		Lus10014197 [exp]	1.4	0.9392
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007659 [exp]	2.4	0.9339
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	2.8	0.9359
					Lus10026628 [exp]	3.9	0.9279
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10024644 [exp]	4.0	0.9282
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	4.6	0.9131
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	4.9	0.9078
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10002015 [exp]	4.9	0.9149
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	6.2	0.8875
AT4G27290			S-locus lectin protein kinase ...		Lus10039767 [exp]	6.9	0.8813

Compare expression of checked genes

Lus10018350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.