Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11600 633 / 0 CYP77B1 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) AT5G04630 393 / 2e-131 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT5G04660 388 / 2e-129 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) AT3G10570 380 / 3e-126 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1) AT3G10560 375 / 2e-124 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT1G64940 315 / 3e-101 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT1G64930 311 / 8e-100 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G64950 310 / 2e-99 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT2G12190 301 / 6e-96 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64900 276 / 3e-86 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007658 [exp] 988 / 0 AT1G11600 663 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007659 [exp] 847 / 0 AT1G11600 639 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10018350 [exp] 843 / 0 AT1G11600 637 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007660 [exp] 607 / 0 AT1G11600 706 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10034156 [exp] 423 / 4e-143 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10028654 [exp] 306 / 1e-97 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020353 [exp] 304 / 9e-97 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020360 [exp] 302 / 6e-96 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 294 / 6e-93 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019000 [exp] 758 / 0 AT1G11600 645 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Potri.004G018800 [exp] 663 / 0 AT1G11600 701 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Potri.008G025500 [exp] 426 / 2e-144 AT5G04660 761 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Potri.005G079600 [exp] 318 / 4e-102 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088018 [exp] 316 / 2e-101 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G087950 [exp] 313 / 2e-100 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088086 [exp] 313 / 2e-100 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088154 [exp] 310 / 3e-99 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.003G104600 [exp] 303 / 2e-96 AT1G64940 455 / 2e-156 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076600 [exp] 293 / 1e-92 AT1G64940 578 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10018351 pacid=23162123 polypeptide=Lus10018351 locus=Lus10018351.g ID=Lus10018351.BGIv1.0 annot-version=v1.0 ATGTCGCTCCCTATTCAATTAACTGCCGTTGCGGTGGATTGCACCTCCTCCTCCACTACTCTTACCTCTTCCGTATATAACAATCTCACTTCCTTTACCA AATCTCACATTGTTCTTCTCAATTCTCCCTTCCTCTCTGCTACAACAATGGAGCTCATAGACATCTTCCTAGCTCTGGCTTCAATCCTCTTCCTCTGCTT CTGGTGGCGCCGCAACTTCTCCACCAAAAAGACCAAATCACCCCTCCCGCCGGCCGTCCCCGGCTGGCCGCTCGTCGGGAACCTCTTCCAGGTCATCCTC AGCCGCCGTCACTTCATCTTCTTCGTCCGCGATCAGCTGAGGGAAAAATACGGCCCGATCTTCACCATGAAGATGGGGCAAAAAACTCTGGTCATCGTCA CGGAACCGGATCTAATCCACGAGGCTTTGGTCCAGAGAGGATCCGCATTCGCCTCCCGCCCACCCGACTCCCCTATCCGGCTCATCTTCAGCATCGGTAA ATGCGCTGTGAATTCCGCCGTCTACGGCCCTCTCTGGCGCGCCCTGCGTCGGAACTTCGTCTCCGAGCTGATCAGTCCGGTTCGGGTCAGGCAGTGCAGC TGGATCCGCGACTGGGCTTTACAGAGCCACATGGACGAGCTACAGTCTGAGTTCAAAAGACTCGGACACGTGGACGTGATGGACACGTGTCGATTCACCG TGTGCCGGATCCTCGTCTGCATCTGCTTCGGCGCCAAGATCTCCGAGGAATGGATCCATGAAATCGACAATGTCACCAAAGAAGTGATGCTGATAACGAT GCCGCACCTCCCCGATTTCTTCCCGATCTTGACGCCGTTGTTCGGAAAACAGATGAAGAAAGCTAAGTTGCTGAGGAAGCAACAAATGAACTGTCTACTT CCTCTGATCAAGAACAGGAAGGCCTTCGTTGAGAAAGGAGAAGAGCCCAATTCGGAGATGGTGAGCCCAATCGGAGCTGCTTACGTCGACTCGCTGTTGG GCCTCGACGCTCCCGGGAGAGGCGCGTTGGGAGATCAGGAGCTCGTCACTCTCTGTACAGAACTTTTCGTGGCCGGAATCGACACAAGCACCAGCGTTCT CCAGTGGGTTTTCCTCGAATTGGTTCTCCATCAGTCGATCCAGCAGAAGCTATACGAAGAGATTGTGTCCCACGTCGGATCTGATGGGCGAATCACGGAG GAACACGTGGAGAGAATGCCTTACTTGAACGCGATCATCAAGGAGAGCCTGAGGATGCATTCTCCTGCGCATTTCACGCTCTCCCACGCGGCAAACGAGG AGACAGAGCTAGGCGGGTACAGGATCCCGACGGATGTGAATGTGGAGTTTTACATAGAGTGGATGACAGAGGATCCGAAGCTGTGGAAGGATCCGGAGGT GTTCCGACCTGAGAGGTTCTTGGACGGTGGGGACGGAGTTGGGGTGGACATGACGGGGACGAAAGGGGAAGTGAAAATGCTTCCTTTCGGGGCGGGTCGG AGGACTTGTCCAGGACTGTCGTTGGGGGTTTTACATGTTAATTTGATGCTGGCGAGGATGGTTCAGGCTTTCAAGTGGGTTCCAGCGCTGGATTACCCGC CTGACCCGACCGAGACTTTTGCATTCACTGTTGTGATGAAGAACCCGCTTAAGGCGGTGATCGTGCCTCGAGTGTGA
AA sequence Show only first row Show all	>Lus10018351 pacid=23162123 polypeptide=Lus10018351 locus=Lus10018351.g ID=Lus10018351.BGIv1.0 annot-version=v1.0 MSLPIQLTAVAVDCTSSSTTLTSSVYNNLTSFTKSHIVLLNSPFLSATTMELIDIFLALASILFLCFWWRRNFSTKKTKSPLPPAVPGWPLVGNLFQVIL SRRHFIFFVRDQLREKYGPIFTMKMGQKTLVIVTEPDLIHEALVQRGSAFASRPPDSPIRLIFSIGKCAVNSAVYGPLWRALRRNFVSELISPVRVRQCS WIRDWALQSHMDELQSEFKRLGHVDVMDTCRFTVCRILVCICFGAKISEEWIHEIDNVTKEVMLITMPHLPDFFPILTPLFGKQMKKAKLLRKQQMNCLL PLIKNRKAFVEKGEEPNSEMVSPIGAAYVDSLLGLDAPGRGALGDQELVTLCTELFVAGIDTSTSVLQWVFLELVLHQSIQQKLYEEIVSHVGSDGRITE EHVERMPYLNAIIKESLRMHSPAHFTLSHAANEETELGGYRIPTDVNVEFYIEWMTEDPKLWKDPEVFRPERFLDGGDGVGVDMTGTKGEVKMLPFGAGR RTCPGLSLGVLHVNLMLARMVQAFKWVPALDYPPDPTETFAFTVVMKNPLKAVIVPRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	0	1
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	1.4	0.9491
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035896 [exp]	1.7	0.9255
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	2.0	0.9453
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	3.5	0.9172
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042203 [exp]	3.9	0.8592
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10024375 [exp]	5.3	0.8739
					Lus10015131 [exp]	5.5	0.8818
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	5.5	0.8958
AT5G48385			FRIGIDA-like protein (.1)		Lus10004132 [exp]	5.7	0.8703
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10027175 [exp]	6.0	0.8701

Compare expression of checked genes

Lus10018351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.