Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21770 430 / 1e-149 Pseudouridine synthase family protein (.1) AT5G51140 43 / 0.0002 Pseudouridine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007657 [exp] 551 / 0 AT4G21770 634 / 0.0 Pseudouridine synthase family protein (.1) Lus10022437 [exp] 46 / 4e-05 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019100 [exp] 448 / 6e-157 AT4G21770 656 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10018352 pacid=23162199 polypeptide=Lus10018352 locus=Lus10018352.g ID=Lus10018352.BGIv1.0 annot-version=v1.0 ATGGAGTTTGGAGTTGTGCATTGTGCCCTTGTATGTCCAAAGCCACCTCCTACAGCCACCCTGGAGGAGATGAGGGTGTATGAAGAAGTCACTGCACCAT CTGTTCTGAAGGAAAGAGCTTCAATCAAAGGGAAGACGGTACGAGAAGCACAGAGGACTTTCAGGGTAACTCGTGGCAGCAAGTATGTGGAAGCTGGGAT GTATTTACGTGTTCATGTGCATCCCAAACGCTCCCCAAGGTCCTATGAAATTGATTGGAAGTCAAGGATTACAGCTGTAGCTGATTCGTATGTTGTTTTG GACAAACCTGCTGGCACATCGGTATGCAGTTTAGCAATTTATGGAGGAACCACAGACAACATTGTAGAAAGCTGTACAACCTTTGCTACTCGGGCATTGG GTTTCACTGAACCATTGAAGACAACTCATCAGATTGCTAATTGCACAGAAGGCTGTGTGTTGTTAGCTAGGGCGAAGGAATACTGCTCAGTATTTCATCA GAAAATCAGAGAGAAACAGGTGAAGAAACTTTACCTAGCTCTTGCTGCATCAGCACTGCCAACTGACATCACATTCCATGCTCTGAGTCAATTCTCCCAT GCCGCTTACAGATTTTACAGAAGGTTGGCTTTTGTATCAACTCGAGATTATGGAATGCAAGGAAGTTCCATGGCCAAGCACCACGACGAAGCAAAGCACC GGGTCATAGACTGTGGTTGGCCATCAAGAGATAAAGCCTACGAATGCAGGATTAACCTCTTAACTGGTCGCACCCATCAGATTCGAGCTCAGCTGGCAGC TTGTGGGGCCCCATTGGTTGGCGACACAATGTACATGCCAGCTGCAGTTGCAGAAATTGCGAGTCCCGGGCTCAATCCATTTGGAAAACACGGACGACAA TCAGATGACGATAACGCAGTGGCAGAGTGGATTGCACTACACGGCAGCGAACCGAGTGCTGCCATCGGCCTGCAGGCATGTCAAATCTCGTGGGACGAAG GCAGATACTGCTACGAGGCCGGGTCTCCCTGGTGGAGATGA
AA sequence Show only first row Show all	>Lus10018352 pacid=23162199 polypeptide=Lus10018352 locus=Lus10018352.g ID=Lus10018352.BGIv1.0 annot-version=v1.0 MEFGVVHCALVCPKPPPTATLEEMRVYEEVTAPSVLKERASIKGKTVREAQRTFRVTRGSKYVEAGMYLRVHVHPKRSPRSYEIDWKSRITAVADSYVVL DKPAGTSVCSLAIYGGTTDNIVESCTTFATRALGFTEPLKTTHQIANCTEGCVLLARAKEYCSVFHQKIREKQVKKLYLALAASALPTDITFHALSQFSH AAYRFYRRLAFVSTRDYGMQGSSMAKHHDEAKHRVIDCGWPSRDKAYECRINLLTGRTHQIRAQLAACGAPLVGDTMYMPAAVAEIASPGLNPFGKHGRQ SDDDNAVAEWIALHGSEPSAAIGLQACQISWDEGRYCYEAGSPWWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21770			Pseudouridine synthase family ...		Lus10018352 [exp]	0	1
AT3G51870			Mitochondrial substrate carrie...		Lus10027789 [exp]	7.1	0.8982
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035739 [exp]	7.9	0.8762
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	17.5	0.8949
AT3G51870			Mitochondrial substrate carrie...		Lus10035509 [exp]	18.4	0.8825
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	19.6	0.8879
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10038158 [exp]	26.1	0.8562
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	28.1	0.8832
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10013168 [exp]	29.5	0.8819
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Lus10018054 [exp]	30.0	0.8543
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10012884 [exp]	31.5	0.8355

Compare expression of checked genes

Lus10018352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.