Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61820 626 / 0 BGLU46 beta glucosidase 46 (.1.3) AT1G61810 613 / 0 BGLU45 beta-glucosidase 45 (.1.2.3) AT4G21760 613 / 0 BGLU47 beta-glucosidase 47 (.1) AT3G18080 469 / 8e-162 BGLU44 B-S glucosidase 44 (.1) AT1G26560 466 / 7e-161 BGLU40 beta glucosidase 40 (.1) AT3G18070 462 / 4e-159 BGLU43 beta glucosidase 43 (.1.2) AT5G54570 446 / 1e-152 BGLU41 beta glucosidase 41 (.1) AT2G44480 445 / 2e-152 BGLU17 beta glucosidase 17 (.1.2) AT2G44450 444 / 4e-152 BGLU15 beta glucosidase 15 (.1) AT5G44640 435 / 1e-148 BGLU13 beta glucosidase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007656 [exp] 996 / 0 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10007655 [exp] 653 / 0 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3) Lus10032660 [exp] 554 / 0 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10031251 [exp] 490 / 6e-170 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 478 / 3e-165 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10018354 [exp] 475 / 6e-165 AT4G21760 462 / 1e-159 beta-glucosidase 47 (.1) Lus10031235 [exp] 476 / 2e-164 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 475 / 3e-164 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10004654 [exp] 470 / 2e-162 AT1G26560 773 / 0.0 beta glucosidase 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019500 [exp] 731 / 0 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019700 [exp] 729 / 0 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019300 [exp] 711 / 0 AT1G61820 636 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019366 [exp] 702 / 0 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019800 [exp] 692 / 0 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.001G403900 [exp] 544 / 0 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.015G041300 [exp] 471 / 9e-163 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.001G015100 [exp] 471 / 1e-162 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 471 / 1e-162 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.012G049300 [exp] 468 / 1e-161 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10018353 pacid=23162096 polypeptide=Lus10018353 locus=Lus10018353.g ID=Lus10018353.BGIv1.0 annot-version=v1.0 ATGAGACTCCTCCTCCTCCACCTTCTAGTGGCGGTCGCCGCCTCCGCCTCGTTCGCCGTGAGAAGCGCTGCCGCCGCAAATTCTCCATTTGGCGACAACT TTCTGTTCGGGACTGCGGCTTCATCTTATCAGTTTGAAGGTGCTTATCTTAGCGACGGCAAAGGACTCAGCAACTGGGACGTCCACAGCCATACCCCAGG CAAGATCGTCGACGGAAGCAACGGAGATGTCGCCGTCGATAGCTACCACCGGTACCAGGAAGATATTAGCTTAATGAAATCCCTCGGAGTCAACAGCTAC CGGTTCTCCATTTCTTGGCCACGAATTCTACCTAAGGGGAGTTTCGGAGAGATTAACGAAGCGGGGATCACATACTACAACGAGCTCATCGATGCACTCT TAGCTAAAGGAGTCGAACCATTCATAACCCTATGCCATTTTGACATCCCACAAGAGCTCGAGGACCGTTACGGTAGCTGGCTAAGCCCACTGATTCAGGA GGATTTCGGGCACTATGCTGACGTGTGTTTCAAGTACTTCGGAGACAGAGTGAAGTACTGGTCAACTTTCAACGAGCCCAACTTCCAGGTGGCGTTCGGT TACCGGCAGGGTACTTTCCCGCCGTCGCGTTGCTCAGGGGATTTCGGGAACTGTACTGCCGGAAACTCCGAAACGGAGCCGTTTATTGCGGCGCACAATG TGATCCTGTCGCACGCGGCAGCGGTGGAGGTTTACAGGACAAAGTACCAGGCTGAGCAGAAGGGCATGATCGGAATTGTCTTGCATTGCGCTTGGTTCGA GCCTTTGAGTGATTCTGAAGCTGATAGGTTGGCGACTTTGAGGGCTAATGCTTTCTTTATGAACTGGTTCTTTGACCCGATTTTGTTCGGGCGGTACCCG GAAGAGATGAAACAGGTTCTTGGGTCGACCCTGCCCGAGTTTACGGGTGAGGAGGTTGAGAGGTTGAAAGGAGGGTTGGATTTCTTGGGGATTAATCATT ACACGAGCTATTACGTTAAGGATTGTATGTACTCGGAGTGTGAAGCTGGACTTGGAACTTCAAGGACTGAAGGTTACTTCCAGCAGCTTCATGAAAGGGA TGGGATTCCCATGGGGAAACCGGGTGATTTGGACTGGCAGTACGTTTACCCACAAGGGATGGAGAAGATGGTGACATACTTGAAAGACAGATACAACAAT GTGCCGATGATCATCTCCGAAAACGGGTACGGTGAAGTGAACAATCCAATGCTGACGACTGGAGATTTCCTGAAGGACGTGAGGAGAGTGGAGTACATGG CGACGTATTTGGATGGGCTAATGGCTGCAATGAGGAAAGGTGCGGATGTTAGGGGCTACTATGCATGGTCGTTGCTCGACAATTTCGAGTGGACCAATGG TTACACACAACGATTCGGGATCTGCCATGTCGATTACAAAACGCTGGAGAGAACTCCGAAGCTGTCAGCCATATGGCTCAGCAAATTCATTGCTAAGTAC AGTAAGACACCCATAGCCCAGATGTGA
AA sequence Show only first row Show all	>Lus10018353 pacid=23162096 polypeptide=Lus10018353 locus=Lus10018353.g ID=Lus10018353.BGIv1.0 annot-version=v1.0 MRLLLLHLLVAVAASASFAVRSAAAANSPFGDNFLFGTAASSYQFEGAYLSDGKGLSNWDVHSHTPGKIVDGSNGDVAVDSYHRYQEDISLMKSLGVNSY RFSISWPRILPKGSFGEINEAGITYYNELIDALLAKGVEPFITLCHFDIPQELEDRYGSWLSPLIQEDFGHYADVCFKYFGDRVKYWSTFNEPNFQVAFG YRQGTFPPSRCSGDFGNCTAGNSETEPFIAAHNVILSHAAAVEVYRTKYQAEQKGMIGIVLHCAWFEPLSDSEADRLATLRANAFFMNWFFDPILFGRYP EEMKQVLGSTLPEFTGEEVERLKGGLDFLGINHYTSYYVKDCMYSECEAGLGTSRTEGYFQQLHERDGIPMGKPGDLDWQYVYPQGMEKMVTYLKDRYNN VPMIISENGYGEVNNPMLTTGDFLKDVRRVEYMATYLDGLMAAMRKGADVRGYYAWSLLDNFEWTNGYTQRFGICHVDYKTLERTPKLSAIWLSKFIAKY SKTPIAQM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10018353 [exp]	0	1
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	1.4	0.8471
AT5G16110			unknown protein		Lus10009170 [exp]	4.0	0.8388
AT3G53810			Concanavalin A-like lectin pro...		Lus10040773 [exp]	5.5	0.7982
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10003261 [exp]	5.7	0.7871
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	6.0	0.8348
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10028232 [exp]	7.7	0.7877
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	9.5	0.8038
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	10.4	0.8307
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10041600 [exp]	10.5	0.7981
					Lus10024821 [exp]	11.4	0.8174

Compare expression of checked genes

Lus10018353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.