Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21760 459 / 3e-158 BGLU47 beta-glucosidase 47 (.1) AT1G61820 454 / 1e-156 BGLU46 beta glucosidase 46 (.1.3) AT1G61810 454 / 2e-156 BGLU45 beta-glucosidase 45 (.1.2.3) AT1G02850 319 / 1e-104 BGLU11 beta glucosidase 11 (.1.2.3.4.5) AT1G26560 308 / 2e-99 BGLU40 beta glucosidase 40 (.1) AT2G44480 305 / 4e-98 BGLU17 beta glucosidase 17 (.1.2) AT3G18070 302 / 2e-97 BGLU43 beta glucosidase 43 (.1.2) AT3G18080 300 / 1e-96 BGLU44 B-S glucosidase 44 (.1) AT5G36890 298 / 4e-96 BGLU42 beta glucosidase 42 (.1.2) AT5G54570 290 / 4e-92 BGLU41 beta glucosidase 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007655 [exp] 716 / 0 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3) Lus10007656 [exp] 479 / 3e-166 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10018353 [exp] 476 / 3e-165 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10032660 [exp] 389 / 5e-124 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10031235 [exp] 326 / 3e-106 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031251 [exp] 325 / 6e-106 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10009644 [exp] 319 / 9e-104 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10037098 [exp] 313 / 2e-101 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10031234 [exp] 311 / 6e-101 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019800 [exp] 545 / 0 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.004G019700 [exp] 485 / 6e-169 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019500 [exp] 485 / 1e-168 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019300 [exp] 477 / 2e-165 AT1G61820 636 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019366 [exp] 476 / 5e-165 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.001G403900 [exp] 385 / 2e-129 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.001G015100 [exp] 320 / 4e-104 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.015G041300 [exp] 317 / 3e-103 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.012G049300 [exp] 316 / 1e-102 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.001G409900 [exp] 315 / 2e-102 AT5G54570 791 / 0.0 beta glucosidase 41 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10018354 pacid=23162176 polypeptide=Lus10018354 locus=Lus10018354.g ID=Lus10018354.BGIv1.0 annot-version=v1.0 ATGGAGGTTTGGTTTACTGTTGTTGTACTTACAACACTACTGATGGTTCTGCTGGCAAGGAGTTCTTCTGGTAATCCTGATGCCCTGCGGAGTAGTAATA ATCCGTTTCCTGGTAACTTTCTGCTTGGAACTGCATCTTCTTCTTACCAGTTTGAAGGAGCTTACTTGTCTGGTGGTAAAGGCCTCAACAACTGGGACGT TTTCACTCATGCATCTGGTACCGTACTGCATTTTTTTATTAGTGTATGTCGTTACATGTACCGGTTCAACCTCTCATACAGTTTCGATGAACTAATTATG CGATCGGTTGCAGGAAACATTGCAGATGGAAGTACTGGAGACGTTGCTGTTGATCACTACAACAGATACCTGGAAGATTTGGATCTGATGAGTGAGCTTG GTGTGAATAGCTACCGTTTCTCTATCTCATGGGCAAGAATCTTACCAAGAATCCAACCTTTTGTCACATTGACTCACTATGACATCCCTCAGGAGCTCGA GGACAGATACAGTGGTTGGCTCAGCCCCAACATACAGTTAAGATCGGAGGACTTCAAAAACTATGCAGGAGTATGCTTCGGATCATTTGGAGACAGGGTG AAGCACTGGGCGACATTCAACGAGCCGAATGTTGCAGCCATCAGGAGTTACAGATCGGGGGTTTTCCCACCGGCTCGATGTTCAGGAGAATTTGGTAATT GTACCGATGGGGATTCGGAGATCGAGCCTTTCGTCGCAGCTCATAACATGATCCTGTCACATGTTGCTGCTGTCAGCCTCTACCGGACCAAGTACCAGCT TGATTTCTACATGAACTGGTTCCTTGACCCGGTCATACTCGGAAGATATCCTGTCGAAATGCGCAAGATTCTAGGATCGAAGCTGCCTAATTTCTCGAGC CGTGAATCGAGGATGCTCATAAGGAGTGGTCTAGATTTCATTGGCTTGAACCATTACACCAGCTTCTACATTAAGGACTGTATCTTTTCTAAGTGTGAAC AAGGTCCAGGTGCTACAAAGACAGAAGGATTTTCTCTGAGGCTTGACCAGAAGAATGGCTCATACATTGGTCAACCTTTTAATGAAATTTTTCATGAAGG GTATGGCCAAAGAGAAGGGAAAGAGACATCTGCTAAGGATTTGCTTAATGACATTAGAAGAGTTCAGTACATGAGTAGCTACTTGGAGGCCTTGGCAGCC GCGGTCAGGAAAGGGGCAGATGTCAGAGGGTATTTTGCGTGGTCGTTGCTAGACAACTTTGAGTGGACTGCTGGGTACACAAGGAGGTTTGGGCTGTACC AAGTTGATTTCTCTAGCTTGGAGAGGATCCCTAAGATTTCCGCAACTTGGTATAAGAACTACATTGAGGAATTGAAGGCTGGTGGTTGTAGAAGAACCTT GTCGTTTTGA
AA sequence Show only first row Show all	>Lus10018354 pacid=23162176 polypeptide=Lus10018354 locus=Lus10018354.g ID=Lus10018354.BGIv1.0 annot-version=v1.0 MEVWFTVVVLTTLLMVLLARSSSGNPDALRSSNNPFPGNFLLGTASSSYQFEGAYLSGGKGLNNWDVFTHASGTVLHFFISVCRYMYRFNLSYSFDELIM RSVAGNIADGSTGDVAVDHYNRYLEDLDLMSELGVNSYRFSISWARILPRIQPFVTLTHYDIPQELEDRYSGWLSPNIQLRSEDFKNYAGVCFGSFGDRV KHWATFNEPNVAAIRSYRSGVFPPARCSGEFGNCTDGDSEIEPFVAAHNMILSHVAAVSLYRTKYQLDFYMNWFLDPVILGRYPVEMRKILGSKLPNFSS RESRMLIRSGLDFIGLNHYTSFYIKDCIFSKCEQGPGATKTEGFSLRLDQKNGSYIGQPFNEIFHEGYGQREGKETSAKDLLNDIRRVQYMSSYLEALAA AVRKGADVRGYFAWSLLDNFEWTAGYTRRFGLYQVDFSSLERIPKISATWYKNYIEELKAGGCRRTLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10001979 [exp]	1.7	0.9023
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10015666 [exp]	2.0	0.9025
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007434 [exp]	2.4	0.8903
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	2.6	0.9053
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10011322 [exp]	3.7	0.8856
					Lus10008674 [exp]	4.5	0.8951
AT1G17820			Putative integral membrane pro...		Lus10040647 [exp]	4.9	0.8990
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10039075 [exp]	6.3	0.8768
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	9.4	0.8834
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10029616 [exp]	10.2	0.8557

Compare expression of checked genes

Lus10018354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.