Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19570 337 / 1e-116 DESZ, AT-CDA1, CDA1 cytidine deaminase 1 (.1) AT4G29600 256 / 6e-85 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29610 249 / 5e-82 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29620 231 / 2e-74 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29570 201 / 2e-63 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29640 199 / 8e-62 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29630 175 / 3e-54 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29650 173 / 5e-53 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29580 164 / 9e-49 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007654 [exp] 494 / 3e-178 AT2G19570 340 / 2e-117 cytidine deaminase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150600 [exp] 363 / 1e-126 AT2G19570 357 / 3e-124 cytidine deaminase 1 (.1) Potri.018G066400 [exp] 362 / 4e-126 AT2G19570 385 / 2e-135 cytidine deaminase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF08211 [flax] [poplar] dCMP_cyt_deam_2 Cytidine and deoxycytidylate deaminase zinc-binding region CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10018355 pacid=23162180 polypeptide=Lus10018355 locus=Lus10018355.g ID=Lus10018355.BGIv1.0 annot-version=v1.0 ATGGAGGAGCAGGTGAGGTTCGTAATCGAAGCGGCGGAAGCGGAATCCATGACGAAGCAATTTGGGCTGACGAAGGTGGAGGGCCTCTTGCCTACATTAG TCAGATCTGCACAATCATTGGCCCGCCCGCCGATCTCCAACTACCAAGTCGGGGCAGTCGGACTAGGATCCTCCGGCCGGATCTTCTTCGGGGCGAACAT CGAATTCCCTGGTCTCCCACTTAACAACTCAATCCACGCCGAGCAATTCCTCGTCACCAATCTGTACCTCAATGCGGAGCCATCAATGTCATCCATGGCC GTCTCTTCCGCACCTTGCGGCCACTGCCGTCAGTTCTTCCAGGAACTCCGATCCTCCGGCTCGATCCGGATCCTTGTAACCGACGACGACCACCGGAGGG AATTTGAGGACTTTTCCAAGTTCCTCCCGCACAGATTCGGCCCTGATGATCTGCTCCACAAGGACTCCCCACTGATTCTGGAGCGCCACGACAACAAGCT CTCCCTGATTTCGGATTCGGATTCGGAAGGGGAGCTGAAAATGGAGGCGCTTGAGGCTGCGAACCGATCCCACGCGCCGTACAGCAAGTGTCCCTCGGGG ATTGCGCTGATGGACAGTGAAGGGAAGGTGTACAGGGGATCGTACATGGAGTCGGCGGCGTTCAACCCGAGTTTGGGTCCGGTTCAGGCGGCGATGGTGG CGTGTATAGTCGGAGGGGCTTACGAGAGGATCGTGGCGGCGGTTCTTGTAGAAAAGGAAGGGGCTTTGGTAAAGCAGGAGGCTACGGCGAGGTTGATCTT GGCTACGGTGGCGCCCAAATGTGAGCTGCAGGTTTTCCATTGCCGGTCGGGGTAG
AA sequence Show only first row Show all	>Lus10018355 pacid=23162180 polypeptide=Lus10018355 locus=Lus10018355.g ID=Lus10018355.BGIv1.0 annot-version=v1.0 MEEQVRFVIEAAEAESMTKQFGLTKVEGLLPTLVRSAQSLARPPISNYQVGAVGLGSSGRIFFGANIEFPGLPLNNSIHAEQFLVTNLYLNAEPSMSSMA VSSAPCGHCRQFFQELRSSGSIRILVTDDDHRREFEDFSKFLPHRFGPDDLLHKDSPLILERHDNKLSLISDSDSEGELKMEALEAANRSHAPYSKCPSG IALMDSEGKVYRGSYMESAAFNPSLGPVQAAMVACIVGGAYERIVAAVLVEKEGALVKQEATARLILATVAPKCELQVFHCRSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	0	1
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10007654 [exp]	1.0	0.9194
AT1G11360			Adenine nucleotide alpha hydro...		Lus10031594 [exp]	1.4	0.8966
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10009440 [exp]	2.4	0.8892
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	4.5	0.8627
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	5.7	0.8505
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10016874 [exp]	6.8	0.8136
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10038865 [exp]	7.1	0.8381
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10034544 [exp]	7.7	0.8207
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10015786 [exp]	7.7	0.8331
AT1G80310		MOT2	molybdate transporter 2, sulfa...		Lus10025816 [exp]	9.4	0.7652

Compare expression of checked genes

Lus10018355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.