Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04885 633 / 0 PCFS4 PCF11P-similar protein 4 (.1) AT1G66500 163 / 2e-43 C2H2ZnF Pre-mRNA cleavage complex II (.1) AT5G43620 160 / 1e-42 Pre-mRNA cleavage complex II (.1) AT2G36480 131 / 5e-31 ENTH/VHS family protein (.1.2.3) AT2G36485 56 / 1e-08 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007652 [exp] 1575 / 0 AT4G04885 343 / 1e-104 PCF11P-similar protein 4 (.1) Lus10006766 [exp] 858 / 0 AT4G04885 650 / 0.0 PCF11P-similar protein 4 (.1) Lus10020058 [exp] 808 / 0 AT4G04885 633 / 0.0 PCF11P-similar protein 4 (.1) Lus10014370 [exp] 191 / 6e-50 AT2G36480 248 / 2e-69 ENTH/VHS family protein (.1.2.3) Lus10035573 [exp] 191 / 8e-50 AT2G36480 362 / 4e-110 ENTH/VHS family protein (.1.2.3) Lus10023867 [exp] 190 / 2e-49 AT2G36480 246 / 2e-68 ENTH/VHS family protein (.1.2.3) Lus10027715 [exp] 187 / 1e-48 AT2G36480 363 / 2e-110 ENTH/VHS family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G020300 [exp] 451 / 2e-143 AT4G04885 386 / 9e-120 PCF11P-similar protein 4 (.1) Potri.011G024800 [exp] 414 / 2e-129 AT4G04885 364 / 1e-111 PCF11P-similar protein 4 (.1) Potri.006G115600 [exp] 187 / 1e-48 AT2G36480 268 / 3e-76 ENTH/VHS family protein (.1.2.3) Potri.017G017800 [exp] 167 / 2e-43 AT4G04885 194 / 3e-53 PCF11P-similar protein 4 (.1) Potri.007G134000 [exp] 104 / 4e-23 AT4G04885 101 / 2e-22 PCF11P-similar protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04818 [flax] [poplar] CID CID domain
Representative CDS sequence Show only first row Show all	>Lus10018357 pacid=23162198 polypeptide=Lus10018357 locus=Lus10018357.g ID=Lus10018357.BGIv1.0 annot-version=v1.0 ATGTCAACAAACGACCACCTCCCGCCGCAGAAGCCTCCGCCGCCGACGCCGATTGTCGATAGGTTCAAGGCCATGTTGAAGCAACGGTCCGTGCAGGCTA GTAGATTCTCCGGTGAAAATGACGGGGGAGGACTTGCCGATGACGTGGTGGAGCTTTACGAGTTGATGCTCTCCGAATTGACTTTCAACTCCAAGCCTAT CATCACTGAATTGACAATCATTGCCGGAGACCAGCGGGAGTATGGAGAGGGAATCGCCGACGCGATCTGTGCTCGAATTATTGAGGCACCTGCTAATCAG AAACTGCCTTCTTTATACCTGGTAGATAGTATTGTTAAGAACATTGGTGAAGACTATGCTCTGTATTTTTCTTCCCGGTTGCCTGAGGTTTTCTGTGAGG CTTATAGGCAAGTAGATCCAAGCCTCTGTCCTTCCATGCGGCATCTTTTTGGTACTTGGTCAAGAGTGTTTCCAGCTTCTGCTCTTCGTGCGATTGAGAT CCAACTACGGTTTTCCCCCGAAGTTAACAATCAATCTTCTGGCTTGAATCCACTGAGGGCTTCTGAGGCACCACGACCTACGCATGGCATACATGTGAAT CCGAAGTACCTGCATCAGTTAGAGCAATCAACTTCAGAGAATGTGGGAGCCCAAAGATTAAAGTCTCATGGAGCTAATAAGGTGCTCCAGTCTTCAAATT CCAGGTTTACAAGACCGTTGTCACCTGCAGCTGAGAGGCCATTATCTTCAGATGTTGATGACTTCTGGCCAATAAATTCTCCTCGCAGACATGTTCATGG AGCATCTGCAGCTCATCCTGGAATTGATTATGGACTTGGAAAAAATGGCGACGGAGATGAAGATGCAGATGAATGGACAAGAAAACCCTATCTTGATGAT AGGGATAGATTTGAAAGTTCTTCCATGCACAGAATTAGCAACGGACATGAGCATCTAGACCCAAGAGCTCTGATAGATGCATATGGAGATGACAGGGTTA AAAGGAATGTGAATATTAACCATCGGCAACATGATCGCGTGAATGTGAATGGCATGGGAAATAGTCTGGCGCCAAGATCATGGCAGAATACAGAAGAGGA TGAATTTGACTGGGAAGATATTAACCCTTCTTTAAGCAATCAGGTGACCGGGAAGTTCTTGTTATCACCTGGTCCTCCCATGGAAACTGTTGGAGTCATG CCTGGCATCGGTAAAACTTCTGCTCCGTCAGGGTCTAATGTTAGGGGCAACCTCATTTTTCAAATGCAGTCACAAGGGAGGGTTGATTCCTCTAACATGG GTGAAGAACTATACCCTACTGCTAATAAAAATCTGAGTATAGATTCTAGGGATCCTCGAGACGTGTTGAATGTACCTCATCACTTGTCTCAATCAACACA TCTTTTGAACGATCGAGAAAGTTTGGCTACTCATGTTGATAAATTCCAAGATACTGAAGCCAATATTTCCATAACAGAGGTTAGGAATCAGTTTGACCGA ATGAATCCTAGCAGCAGCGCTACTAATTTAGAGATGTCTGGCAGCTTGCATGGTCAACAGTATAACAGTTTTGATGGCAGAGGGCCTGCCTTAATGAAGC AACCCTTCATGGCCTTGAATCAGCAAAATCATGGAAAATTGAACCCTTTCTTACCCCAGTATCGGCCACCATTGGAAGTTCGAGAAAGCTTCCCTCAATC TTCAATGGCTTCGATTCCACCTCATTCCCTTACACACCCTTCAAGCCATGGGTACCCCATGCAACGCCCTGGAGGTAGCATAAACATGGGCCCCCCACCT TCACAAATAAACAATATCCTCAGTAACTTACATTCACAGATGGGTGTAAGACCACCTCTACCTCTAGGTCCTCGTCCTGCCTCTCAAATGATGCCTAACC CCCAAAATAGTGGCCCAGGTGGTGCGTTTTCCGGTTTGATTAATTCTCTCATGTCCCAAGGTTTCATCTCATTGACGAATCAGGCACCTCTGCAGGGGTC TTTGGGACTCGAGTTCGACGCTGATCTTCTGAAGGTGCGGCATGAGTCTGCAATTAGTGCTCTTTATGCCGATCTCCCGAGACAGTGCAAGACTTGCGGC CTTCGCTTCAAGTGCCAAGAAGAGCACAGCAGTCACATGGATTGGCATGTTACCAGGAACCGTATGTCAAAATCTCGTAAGCAGAAACCTTCCCGAAAGT GGTTTGTGAGTGCAAGTATGTGGCTCACTGGTGCCGAGGCGCTGGGGACCGATGCCGTTCCTAGTTTCTTGACTTCTGAGGTTGTCGTTGATGAGAAGAA GGACGACGAAGAATTGGCTGTTCCTGCCGATGAAGATCAGAATGAATGTACGTTATGTGGGGAGCGTTTCGATGATTTCTTTAGTGACGAGACTGAGGAG TGGATGTACAAAGGAGCTGTGTATTTGAATGTCCCCCACGGTTCAACAGCTGGGATGGATCGGTCTCAGTTAGGCCCTATAGTTCATGCCAAGTGCCGGT CGGAATCTAGTGTAGCTCCCCCTGAAAATTTAAGGCAAGCTGAAGGGCTAACAATAGTTCATGCCAAGTGCCGGTCGGAATCTAGTGTAGCTCCCCCTGA AAATTTAAGGCAAGCTGAAGGGGGAAATATAGAAGAAGGTAGTCTGAGGAAAAGACTCAGGACCTGA
AA sequence Show only first row Show all	>Lus10018357 pacid=23162198 polypeptide=Lus10018357 locus=Lus10018357.g ID=Lus10018357.BGIv1.0 annot-version=v1.0 MSTNDHLPPQKPPPPTPIVDRFKAMLKQRSVQASRFSGENDGGGLADDVVELYELMLSELTFNSKPIITELTIIAGDQREYGEGIADAICARIIEAPANQ KLPSLYLVDSIVKNIGEDYALYFSSRLPEVFCEAYRQVDPSLCPSMRHLFGTWSRVFPASALRAIEIQLRFSPEVNNQSSGLNPLRASEAPRPTHGIHVN PKYLHQLEQSTSENVGAQRLKSHGANKVLQSSNSRFTRPLSPAAERPLSSDVDDFWPINSPRRHVHGASAAHPGIDYGLGKNGDGDEDADEWTRKPYLDD RDRFESSSMHRISNGHEHLDPRALIDAYGDDRVKRNVNINHRQHDRVNVNGMGNSLAPRSWQNTEEDEFDWEDINPSLSNQVTGKFLLSPGPPMETVGVM PGIGKTSAPSGSNVRGNLIFQMQSQGRVDSSNMGEELYPTANKNLSIDSRDPRDVLNVPHHLSQSTHLLNDRESLATHVDKFQDTEANISITEVRNQFDR MNPSSSATNLEMSGSLHGQQYNSFDGRGPALMKQPFMALNQQNHGKLNPFLPQYRPPLEVRESFPQSSMASIPPHSLTHPSSHGYPMQRPGGSINMGPPP SQINNILSNLHSQMGVRPPLPLGPRPASQMMPNPQNSGPGGAFSGLINSLMSQGFISLTNQAPLQGSLGLEFDADLLKVRHESAISALYADLPRQCKTCG LRFKCQEEHSSHMDWHVTRNRMSKSRKQKPSRKWFVSASMWLTGAEALGTDAVPSFLTSEVVVDEKKDDEELAVPADEDQNECTLCGERFDDFFSDETEE WMYKGAVYLNVPHGSTAGMDRSQLGPIVHAKCRSESSVAPPENLRQAEGLTIVHAKCRSESSVAPPENLRQAEGGNIEEGSLRKRLRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	0	1
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10041301 [exp]	1.4	0.9198
AT3G13990			Kinase-related protein of unkn...		Lus10037658 [exp]	1.7	0.9227
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	2.4	0.9175
AT5G08780			winged-helix DNA-binding trans...		Lus10002941 [exp]	2.6	0.8906
AT1G64260			MuDR family transposase (.1)		Lus10038037 [exp]	5.3	0.8819
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	5.5	0.8943
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016405 [exp]	6.0	0.8760
AT1G79150			binding (.1)		Lus10034234 [exp]	6.9	0.9093
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10026044 [exp]	6.9	0.8709
AT3G13990			Kinase-related protein of unkn...		Lus10015640 [exp]	8.5	0.8876

Compare expression of checked genes

Lus10018357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.