Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28237 524 / 0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) AT5G54810 489 / 2e-171 ATTSB1, TRP2, TRPB, TSB1 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) AT4G27070 487 / 2e-170 TSB2 tryptophan synthase beta-subunit 2 (.1) AT5G38530 91 / 1e-19 TSBtype2 tryptophan synthase beta type 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011154 [exp] 493 / 3e-172 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10043059 [exp] 491 / 8e-172 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10007651 [exp] 380 / 5e-129 AT5G28237 483 / 4e-169 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10008278 [exp] 115 / 1e-31 AT5G28237 104 / 3e-28 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10000306 [exp] 100 / 3e-22 AT5G38530 779 / 0.0 tryptophan synthase beta type 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G024900 [exp] 550 / 0 AT5G28237 586 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Potri.011G136000 [exp] 485 / 1e-169 AT5G54810 755 / 0.0 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) Potri.001G420300 [exp] 485 / 1e-169 AT4G27070 754 / 0.0 tryptophan synthase beta-subunit 2 (.1) Potri.017G109600 [exp] 91 / 1e-19 AT5G38530 828 / 0.0 tryptophan synthase beta type 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10018358 pacid=23162116 polypeptide=Lus10018358 locus=Lus10018358.g ID=Lus10018358.BGIv1.0 annot-version=v1.0 ATGGCCAACCACGCCTACAAACCTGCCTTCGGCTCCATGATATGTTCCAAGAGATCATCAAGTCTAGTGGCTACTTGTAGTCATCTTGTGGTTGATGGTC ATGTGTCGGCCAGCTCGCCTCGGCTGCAGTCAGTTGATGTCGCTAGCTGTCGTCCTATGTTGTTTGACGACGGCAAGGCTTCCATGTCGGGGAAGTTCGG TAGGTTCGGTGGCAAGTTCGTCCCCGAGACACTCATCTCTTGCCTCTCTGAGCTTGAAGCTCTGTTTCTTTGCCTTCTCAAGGATCCTCAGTTTCAGGAG GAGCTAAGCACAACACTAAAAGAATATGTAGGAAGGGAGACCCCACTATACTTCGCTCAGCGTCTCACGGCCCACTACAAGGCTCAAAACATGGGCCAGG GCCCAGACATCTACATCAAAAGGGAAGACATGACCCACTTCGGGGCCCACAAGATGAACAACGCGATAGCCCAGGCGATGATCGCCAAACGGATGGGACT CAACTCCGTCGTGGCGGCCCCCGGCGCCGGCCNNNNNNNNGCGGCCGGCCAGCCCGGCGTCGCCACTGCAGCCGCTTGCGCGAAGCTCGGCCTCCATTGC ACGGTCTTCATGGGCAGGACGGACATGGACCGGCAGCCATCAAACGTAGAGCTGATGAAGCTCCTGGCGGCGGAGGTGAAGGCCGTCGACGGAGGGTTTA AGGATGCCAGCTCGGAGGCGATCAGAGAATGGGTGGGGAAATTGGGGGAGTGTTATTATCTGACCGGAGCTGCAGTGGGGCCGCATCCGTGTCCGGTTAT GGTGCGGGAGTTTCAGTCTGTGATCGGAAAGGAGACTCGGCGACAGGCGGCGGAGAAGTGGGGCGGTAAGCCGGATGTCGTCGTGGCATGCGTCGGGAGT GGGTCTAATGCTTTAGGGATGTTTCATGAGTTTTTTGAGGATCTCGAGGTGAGGCTGATCGGAGTCGAAGCTGCTGGGTTCGGGTTGAACAGCGGGAAAC ACTCGGCGACTCTCGCCGCCGGTGAAGTTGGGGTTTATCATGGAGCTATGAGTTACTTGTTGCAGGATAATGAAGGGCAGATCATCTGCCCACATTCCAT TGGCGTCGGGTTGGAATATCCAGGAGTAGCGCCAGAGTTGAGCTATCTTAAAGAGTCAGGAAGGATGGAGTACTACTCAGCGACGGACACGGAGGCAGTG GATGCATACAGAAGGGTAGCGAGATTAGAAGGTATAATCCCAGCGCTTGAAGCTGCTCATGCATTTGCATACTTAGAGAGGCTTTGCCCTAACTTGGGCG ACAGGACAAAAGTCGTCGTAAATTGCAGCGGCCGGGGCGATAAAGATGCTGCTGCAGTCAACAGTTTGTAG
AA sequence Show only first row Show all	>Lus10018358 pacid=23162116 polypeptide=Lus10018358 locus=Lus10018358.g ID=Lus10018358.BGIv1.0 annot-version=v1.0 MANHAYKPAFGSMICSKRSSSLVATCSHLVVDGHVSASSPRLQSVDVASCRPMLFDDGKASMSGKFGRFGGKFVPETLISCLSELEALFLCLLKDPQFQE ELSTTLKEYVGRETPLYFAQRLTAHYKAQNMGQGPDIYIKREDMTHFGAHKMNNAIAQAMIAKRMGLNSVVAAPGAGXXXAAGQPGVATAAACAKLGLHC TVFMGRTDMDRQPSNVELMKLLAAEVKAVDGGFKDASSEAIREWVGKLGECYYLTGAAVGPHPCPVMVREFQSVIGKETRRQAAEKWGGKPDVVVACVGS GSNALGMFHEFFEDLEVRLIGVEAAGFGLNSGKHSATLAAGEVGVYHGAMSYLLQDNEGQIICPHSIGVGLEYPGVAPELSYLKESGRMEYYSATDTEAV DAYRRVARLEGIIPALEAAHAFAYLERLCPNLGDRTKVVVNCSGRGDKDAAAVNSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10018358 [exp]	0	1
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	4.4	0.9542
AT5G36000			unknown protein		Lus10004013 [exp]	10.8	0.9318
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	11.4	0.9359
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	12.0	0.9316
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	13.2	0.9314
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	14.1	0.9350
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	16.3	0.9305
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	17.6	0.9297
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10017112 [exp]	18.3	0.8646
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10039650 [exp]	21.2	0.9045

Compare expression of checked genes

Lus10018358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.