Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04890 789 / 0 HD PDF2 protodermal factor 2 (.1) AT4G21750 782 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 729 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G00730 504 / 4e-172 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 502 / 4e-171 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT2G32370 484 / 4e-165 HD HDG3 homeodomain GLABROUS 3 (.1) AT1G73360 418 / 1e-139 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 416 / 4e-139 HD HDG12 homeodomain GLABROUS 12 (.1) AT5G52170 410 / 5e-137 HD HDG7 homeodomain GLABROUS 7 (.1) AT1G79840 409 / 7e-136 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007650 [exp] 938 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10020059 [exp] 836 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10006765 [exp] 831 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027175 [exp] 722 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10039667 [exp] 720 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10031321 [exp] 477 / 1e-162 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10031892 [exp] 459 / 6e-157 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10036567 [exp] 442 / 5e-148 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10037554 [exp] 413 / 6e-137 AT1G79840 846 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G020400 [exp] 804 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 801 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G230200 [exp] 739 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G152000 [exp] 730 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G075200 [exp] 549 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 541 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G038500 [exp] 464 / 1e-157 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.015G034100 [exp] 464 / 2e-157 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G139300 [exp] 460 / 2e-155 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.003G052400 [exp] 457 / 3e-154 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain
Representative CDS sequence Show only first row Show all	>Lus10018359 pacid=23162125 polypeptide=Lus10018359 locus=Lus10018359.g ID=Lus10018359.BGIv1.0 annot-version=v1.0 ATGATCGTGGAGCTCGCGGTGGCCGCCATGGAGGAGCTTGTTAGGATGGCTCAGGCAGGGCAGCCACTTTGGAGCACTGTGAAAAATGGTGAAGCTCTCA ACGAGGAGGAGTACTTGAGAAGCTTCCCAAGAGGGATCGGTCCGAAAGCTTTAGGGCTACGGTCCGAGGCTTCGAGGGAATCGGCCATTGTGATCATGAA TCATGTTAACCTTGTGGAAATCCTGATGGATGTGAACCAATGGTCAACATTGTTCTGTGGGATTGTGTCCAGAGCTATGACTTTGGATGTGTTGTCCACT GGCGTTGCTGGCAACTACAATGGAGCATTGCAAGTGATGACTGCCGAGTTCCAAGTCCCGTCGCCATTGGTTCCTTCGAGGGAGCACTACTTCGTAAGGT ATTGTAAGCAGCAGAGCGACGGGACATGGGCCGTGGTAGACGTGTCCTTGGACAGCCTACTAAGGCCAAATCCACCATTGAAAAATCGAAGGAGGCCGTC GGGTTGTCTAATCCAAGAATTACCAAATGGTTACTCCAAGGTCACATGGGTTGAACACATTGAAGTCGACAATGCATCCGTACACAACATGTACAAATCA ATGGTTCACTCGGGGCTAGCCTTCGGGGCGAAACGATGGGTCGCCACGCTGGACCGTCAGTGCGAGCGTCTAGCCAGCTCGATGGCCGTCAACATTCCAG CTGGAGATCTATGTGTAATGACGGGGCCGGAAGGGAGGAAGAGCATACTGAAGCTGGCGGAGAGGATGGTGATGAGCTTTTGCACAGGCGTCGGAGCATC AACGGCGCATGCATGGACGACGTTGTCTCCATCGGGAAGTGATGACGTCAGGGTGATGACTAGGAAGAGCATGGATGATCCCGGTAGGCCTCCGGGGATT GTACTTAGCGCTGCGACGTCATTCTGGATATCTGTTCCTCCTAAGACGGTGTTTGATTTCCTTAGGGATGAGAACCACCGCAGTGAGTGGGACATCCTTT CCAATGGTGGCCAAGTGCAAGAAATAGCTCATATAGCCAATGGACGTGACCCTGGAAACTGTGTCTCATTGCTTCGGGTGAATAGTGGAAATTCGAGTCA GAGCAACATGTTGATACTACAGGAGAGCAACACGGACTCAACGGGATCCTATGTGATCTACGCCCCAGTGGACATAGCGGCCATGAACATAGTCTTGGGT GGAGGAGATCCGGATTATGTGGCCCTACTGCCCTCGGGGTTTGCAATTCTCCCGGATGGGCCGCCAATGAAATCGGACGTTGATGATAAGGGGGTCGTTA AGCATGATAATATGGATTCCGGTGGGTCATTGCTCACCGTAGCGTTTCAGATACTGGTAGACTCGATTCCGACAGCGAAGCTCTCGCTTAATTCTGTGAC GACGGTGAATAGTCTGATCAAGTGCACGGTTGAGCGGATTAAGGAAGCTGTCGACGAGAAAAGTGGTTAG
AA sequence Show only first row Show all	>Lus10018359 pacid=23162125 polypeptide=Lus10018359 locus=Lus10018359.g ID=Lus10018359.BGIv1.0 annot-version=v1.0 MIVELAVAAMEELVRMAQAGQPLWSTVKNGEALNEEEYLRSFPRGIGPKALGLRSEASRESAIVIMNHVNLVEILMDVNQWSTLFCGIVSRAMTLDVLST GVAGNYNGALQVMTAEFQVPSPLVPSREHYFVRYCKQQSDGTWAVVDVSLDSLLRPNPPLKNRRRPSGCLIQELPNGYSKVTWVEHIEVDNASVHNMYKS MVHSGLAFGAKRWVATLDRQCERLASSMAVNIPAGDLCVMTGPEGRKSILKLAERMVMSFCTGVGASTAHAWTTLSPSGSDDVRVMTRKSMDDPGRPPGI VLSAATSFWISVPPKTVFDFLRDENHRSEWDILSNGGQVQEIAHIANGRDPGNCVSLLRVNSGNSSQSNMLILQESNTDSTGSYVIYAPVDIAAMNIVLG GGDPDYVALLPSGFAILPDGPPMKSDVDDKGVVKHDNMDSGGSLLTVAFQILVDSIPTAKLSLNSVTTVNSLIKCTVERIKEAVDEKSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	0	1
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	1.0	0.9766
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10007650 [exp]	2.4	0.9648
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10027459 [exp]	3.5	0.9400
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	3.5	0.9477
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10043080 [exp]	4.7	0.9164
					Lus10002011 [exp]	4.9	0.9318
AT3G50390			Transducin/WD40 repeat-like su...		Lus10011699 [exp]	4.9	0.9297
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	5.5	0.9352
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10009562 [exp]	6.3	0.9223
					Lus10024122 [exp]	6.7	0.9028

Compare expression of checked genes

Lus10018359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.