Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04890 289 / 4e-93 HD PDF2 protodermal factor 2 (.1) AT4G21750 275 / 2e-87 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 256 / 7e-81 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT1G73360 209 / 7e-63 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT4G00730 196 / 4e-59 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 195 / 2e-57 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT5G46880 191 / 1e-55 HD HDG5, HB-7 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) AT5G52170 187 / 4e-55 HD HDG7 homeodomain GLABROUS 7 (.1) AT1G17920 184 / 6e-54 HD HDG12 homeodomain GLABROUS 12 (.1) AT2G32370 177 / 2e-51 HD HDG3 homeodomain GLABROUS 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007650 [exp] 414 / 7e-142 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10006765 [exp] 320 / 3e-105 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 281 / 2e-90 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10039667 [exp] 264 / 5e-83 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10027175 [exp] 260 / 2e-81 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10036567 [exp] 207 / 8e-62 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10031321 [exp] 204 / 3e-61 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10027437 [exp] 189 / 2e-55 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10041362 [exp] 183 / 2e-54 AT4G00730 379 / 2e-122 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G020400 [exp] 297 / 2e-96 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 292 / 2e-94 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G152000 [exp] 274 / 4e-87 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 267 / 1e-84 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G075200 [exp] 213 / 8e-64 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G034100 [exp] 210 / 1e-63 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 207 / 1e-62 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.002G154700 [exp] 209 / 2e-62 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 200 / 1e-59 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 197 / 3e-58 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10018360 pacid=23162227 polypeptide=Lus10018360 locus=Lus10018360.g ID=Lus10018360.BGIv1.0 annot-version=v1.0 ATGTTCCAACCAAACATGTTCGACAACCCGCACATATTCAAGATGGACGAAATGGGGAAGCCGTCGAGGGACTTTTTTGATGACTATGATACTAAGTCCG GCACGGAGACTATCGGTACCGGAGGAGCTCCGTCGGGGGAAGATGACCCAGACGGTAGCCCCTCCCAGCAGCCTCCGAATAAGAAGAAGCGTTACCATCG TCATACTCAGCATCAAATCCAAGAGATGGAGTCTTTCTTCAAGGAGTGTCCTCATCCTGATGATAAGCAGAGGAAGGAGTTGGGCAGGGAGTTGGGGTTG GAGCCTTTGCAAATTAAGTTTTGGTTCCAAAACAAGCGCACACAAATGAAGGCTCAACACGAGCGCCATGAGAACTCGATTTTGAAGGCGGAGAATGATA AGCTTCGCCTCGAGAACAACAGGTACAAGGAGGCATTGAGCAATGCTTCATGCCCTAACTGCGGTGGGCCAGCTGCCCTAGGCGAAATGTCATTCGACGA GCAGCAGCTCAGGATCGAAAATGCTCGTTTACGAGATGAGATTGACAGGATCTCGGCGATTGCTGCAAAGTACGTAGGCAAGCCGATCACATCGTTCTCC CACCAGTCGTCCCTCGAACTCGGGACCGCCACTTTCGGAGGGCCACAGTCTCCACCCCCCCGCCCGCGCCCCCGCCACTTTCGGAGGGTCACATTCTTCT TTTGGGGAAATGTACGGACCCGCCACCGACTTCCTTAG
AA sequence Show only first row Show all	>Lus10018360 pacid=23162227 polypeptide=Lus10018360 locus=Lus10018360.g ID=Lus10018360.BGIv1.0 annot-version=v1.0 MFQPNMFDNPHIFKMDEMGKPSRDFFDDYDTKSGTETIGTGGAPSGEDDPDGSPSQQPPNKKKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRELGL EPLQIKFWFQNKRTQMKAQHERHENSILKAENDKLRLENNRYKEALSNASCPNCGGPAALGEMSFDEQQLRIENARLRDEIDRISAIAAKYVGKPITSFS HQSSLELGTATFGGPQSPPPRPRPRHFRRVTFFFWGNVRTRHRLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10018360 [exp]	0	1
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10020059 [exp]	1.4	0.9848
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10006765 [exp]	2.0	0.9823
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031892 [exp]	2.2	0.9512
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013336 [exp]	2.8	0.9609
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10007650 [exp]	3.5	0.9616
AT3G48200			unknown protein		Lus10035212 [exp]	4.6	0.9424
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10022277 [exp]	6.0	0.9264
AT4G33180			alpha/beta-Hydrolases superfam...		Lus10038076 [exp]	6.3	0.9400
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	6.9	0.9452
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031321 [exp]	7.4	0.9173

Compare expression of checked genes

Lus10018360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.