Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54200 84 / 1e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G46150 63 / 3e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G13270 63 / 3e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 55 / 2e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44380 52 / 3e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G64450 40 / 0.0004 Glycine-rich protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007649 [exp] 320 / 6e-113 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006764 [exp] 241 / 6e-82 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020060 [exp] 232 / 6e-78 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035612 [exp] 94 / 2e-23 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 93 / 3e-23 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043084 [exp] 87 / 6e-21 AT3G54200 141 / 2e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032671 [exp] 86 / 2e-20 AT3G54200 141 / 1e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10025649 [exp] 83 / 8e-20 AT3G54200 152 / 2e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018185 [exp] 82 / 2e-19 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025100 [exp] 138 / 3e-41 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 133 / 1e-39 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 110 / 2e-30 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 93 / 1e-23 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 82 / 4e-19 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 71 / 2e-15 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 67 / 8e-14 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 63 / 2e-12 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 62 / 6e-12 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098100 [exp] 55 / 2e-09 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10018361 pacid=23162106 polypeptide=Lus10018361 locus=Lus10018361.g ID=Lus10018361.BGIv1.0 annot-version=v1.0 ATGGGTTGTTGTCGCCGTCCTGGCCGCCTGAAGCTCTGCCTCCTCATAACAACAATCCTCCTCCTAATCCTCGTAGTCGCCGCCGTCATCATCTTCTTCA CCGTCCTGAAGCCCAAACAGCCTACAATCACCACCAAGTCACTCACCCTCGACCGGGTCGAGTACTCACTCAACCCGAAACCCTTCCTCAACTTCACCTT AGGGATCGTCGTCGAAGTCAAGAACCCTAACTACGGCAGCTTCCTATACTCTGGCAGCACCGCCTACTTGGTGTACCGGGGAAACCTCGTTGGAGTTTCC CCTGTCCCCGCTGGTAACTCGAAGGCCAGGTCGACCGAGGAGATCCGGACGAATATTACGCTGATGGCAGGGGAGTTTCTGACGGACTTTGCGTTCCTCG GGGATCTGATCGCCGGGGTGTTGAATTTCACGTCGACGTCGTCGGTGCATGGGAAGGCGGAGATGTTTAAGGTTTTGAAGGCTGAGATTACGAGTAACTC GACGTGTGAGATTTCGGTTCATGTTGGGACTCAGAAGATGGATTCCAGTTGTAAAACAGTCGTCATCCGGTGA
AA sequence Show only first row Show all	>Lus10018361 pacid=23162106 polypeptide=Lus10018361 locus=Lus10018361.g ID=Lus10018361.BGIv1.0 annot-version=v1.0 MGCCRRPGRLKLCLLITTILLLILVVAAVIIFFTVLKPKQPTITTKSLTLDRVEYSLNPKPFLNFTLGIVVEVKNPNYGSFLYSGSTAYLVYRGNLVGVS PVPAGNSKARSTEEIRTNITLMAGEFLTDFAFLGDLIAGVLNFTSTSSVHGKAEMFKVLKAEITSNSTCEISVHVGTQKMDSSCKTVVIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10018361 [exp]	0	1
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	5.6	0.9283
					Lus10037765 [exp]	6.5	0.8652
AT3G29575		AFP3	ABI five binding protein 3 (.1...		Lus10003145 [exp]	8.4	0.8751
AT1G79890			RAD3-like DNA-binding helicase...		Lus10037548 [exp]	9.5	0.9054
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10042835 [exp]	10.2	0.8752
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	12.2	0.8963
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	12.2	0.9113
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013915 [exp]	12.4	0.8917
AT3G63480			ATP binding microtubule motor ...		Lus10035344 [exp]	12.8	0.8979
AT5G45650			subtilase family protein (.1)		Lus10020458 [exp]	17.2	0.8562

Compare expression of checked genes

Lus10018361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.