Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04900 72 / 3e-16 RIC10 ROP-interactive CRIB motif-containing protein 10 (.1) AT4G21745 71 / 7e-16 PAK-box/P21-Rho-binding family protein (.1) AT4G28556 66 / 1e-13 RIC7 PAK-box/P21-Rho-binding family protein (.1) AT1G03982 64 / 5e-13 PAK-box/P21-Rho-binding family protein (.1) AT2G33460 63 / 3e-12 RIC1 ROP-interactive CRIB motif-containing protein 1 (.1) AT2G20430 62 / 5e-12 RIC6 ROP-interactive CRIB motif-containing protein 6 (.1) AT1G04450 61 / 2e-11 RIC3 ROP-interactive CRIB motif-containing protein 3 (.1) AT3G23380 59 / 6e-11 RIC5 ROP-interactive CRIB motif-containing protein 5 (.1) AT1G61795 54 / 1e-09 PAK-box/P21-Rho-binding family protein (.1) AT1G27380 39 / 0.0003 RIC2 ROP-interactive CRIB motif-containing protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007648 [exp] 229 / 1e-77 AT4G04900 88 / 2e-22 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10006763 [exp] 110 / 9e-31 AT4G04900 81 / 2e-19 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10011805 [exp] 71 / 7e-15 AT2G33460 97 / 2e-24 ROP-interactive CRIB motif-containing protein 1 (.1) Lus10020060 [exp] 69 / 2e-14 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021168 [exp] 67 / 2e-13 AT2G33460 81 / 3e-17 ROP-interactive CRIB motif-containing protein 1 (.1) Lus10003625 [exp] 61 / 1e-11 AT4G28556 94 / 3e-24 PAK-box/P21-Rho-binding family protein (.1) Lus10008243 [exp] 59 / 4e-11 AT4G28556 94 / 3e-24 PAK-box/P21-Rho-binding family protein (.1) Lus10021974 [exp] 40 / 0.0002 AT2G33460 51 / 4e-08 ROP-interactive CRIB motif-containing protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025300 [exp] 127 / 1e-37 AT4G04900 89 / 5e-23 ROP-interactive CRIB motif-containing protein 10 (.1) Potri.004G020650 [exp] 120 / 3e-35 AT4G04900 73 / 1e-16 ROP-interactive CRIB motif-containing protein 10 (.1) Potri.002G035500 [exp] 78 / 1e-17 AT2G20430 105 / 1e-27 ROP-interactive CRIB motif-containing protein 6 (.1) Potri.010G069500 [exp] 75 / 2e-16 AT4G28556 99 / 1e-24 PAK-box/P21-Rho-binding family protein (.1) Potri.005G227500 [exp] 72 / 2e-15 AT4G28556 106 / 5e-28 PAK-box/P21-Rho-binding family protein (.1) Potri.008G168900 [exp] 69 / 2e-14 AT2G33460 101 / 4e-26 ROP-interactive CRIB motif-containing protein 1 (.1) Potri.002G233400 [exp] 51 / 5e-08 AT5G16490 89 / 1e-22 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.014G147000 [exp] 41 / 0.0001 AT5G16490 76 / 8e-18 ROP-interactive CRIB motif-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018362 pacid=23162182 polypeptide=Lus10018362 locus=Lus10018362.g ID=Lus10018362.BGIv1.0 annot-version=v1.0 ATGGGAACCAACAAGATTAAAGGGATCTACAAGGGTTTCAAGTTCATCACCCAAATCTTTGTTGTGAAGGAGAGGGAGTTGGAAATTGGGTACCCAACTG ATGTTAAACATGTTGCTCATATTGGTTGGGATGGTGCCTCTGGTAATCCACCCAGCTGGATGAGTGAGTACAAAACAGCTCCTGAATTCTCCTCCTCAAA GACTTTCAATAATGGTGGAAACCCAAGAGAGTCCAATTCAACGTCCTTGTCTCCATGGTCCTCTCAAGATTTTAGTGAATCAATGGGACTCCATCAGCTT CCAGGATCAAGCATGTTTGAACAGAACATTCCCAATTCAGACCCACCAAACATCCCAAAGAAACACAAGAGGAAGAAGAAGACTTCTTCAACATCAGCAT CAACAATTTCTCCTCCTAAAGGTTCAACATCATCGTCGCCTCCAATGACTTCTTCTTCCTTGACCAAGCCCTTTCGTTCTTCAAAGAAGAAAGCAATGTA CCACGAGCTAGAGCACCAGACTGTGAACGTGCAAGCATAG
AA sequence Show only first row Show all	>Lus10018362 pacid=23162182 polypeptide=Lus10018362 locus=Lus10018362.g ID=Lus10018362.BGIv1.0 annot-version=v1.0 MGTNKIKGIYKGFKFITQIFVVKERELEIGYPTDVKHVAHIGWDGASGNPPSWMSEYKTAPEFSSSKTFNNGGNPRESNSTSLSPWSSQDFSESMGLHQL PGSSMFEQNIPNSDPPNIPKKHKRKKKTSSTSASTISPPKGSTSSSPPMTSSSLTKPFRSSKKKAMYHELEHQTVNVQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10018362 [exp]	0	1
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10039125 [exp]	1.0	0.8418
AT1G53035			unknown protein		Lus10018600 [exp]	1.7	0.8236
					Lus10017544 [exp]	2.0	0.8256
AT4G39870			TLD-domain containing nucleola...		Lus10024053 [exp]	4.7	0.7831
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10004944 [exp]	6.0	0.7981
AT2G37960			unknown protein		Lus10027749 [exp]	7.7	0.7687
AT5G08630			DDT domain-containing protein ...		Lus10039626 [exp]	8.8	0.7962
AT5G02440			unknown protein		Lus10023770 [exp]	9.0	0.7847
AT2G20410			RNA-binding ASCH domain protei...		Lus10042558 [exp]	11.2	0.7780
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10037169 [exp]	13.7	0.7704

Compare expression of checked genes

Lus10018362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.