Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61790 452 / 1e-160 Oligosaccharyltransferase complex/magnesium transporter family protein (.1) AT1G11560 363 / 4e-125 Oligosaccharyltransferase complex/magnesium transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007647 [exp] 640 / 0 AT1G61790 462 / 3e-164 Oligosaccharyltransferase complex/magnesium transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025700 [exp] 426 / 9e-150 AT1G61790 397 / 1e-138 Oligosaccharyltransferase complex/magnesium transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF04756 [flax] [poplar] OST3_OST6 OST3 / OST6 family, transporter family
Representative CDS sequence Show only first row Show all	>Lus10018363 pacid=23162129 polypeptide=Lus10018363 locus=Lus10018363.g ID=Lus10018363.BGIv1.0 annot-version=v1.0 ATGGCGATCTCCACCAAGAAATCCGATCAACATTTCCTTCTCCTCCTCCTCACAATCGCCGCTGTATTTACCGTCTGCGCGGCCACCTCCTCCTCTGATC TAGTCAGCGAGCTTCTCTCCCTCCAATCCCAATCCAAATCGGGAGTAATCCACTTCGACGACCACTCGATCTCCCGATTCCTAACCTCCACAAAGCCCCC GCGGCCGTACTCCCTCTTAGTCTTCTTCGACGCCACGCAGCTCCACGACAAGAGCGAGCTCCGCCTCAAGGAGCTCCACCGCGAATTCTCCATCCTCTCA TCTTCCTTCATCGCCAACAACCCTAACAACGGCAAGCTCTTCTTCTGCGAGATCGAGTTCAAAGAATCGCAATCATCCTTCTCCCTCTTCGGCGTCCAAT CCTTACCTCATATCCGACTGATCTCCCCCGATGTCAAGAACCCAAAGCAATCGGAGCAGATGGACCAGGGCGATTTCTCCAGAATGGCTGAATCCATGGC CGAGTTCGTTGAAACTCGGACGAAGATAACCGTCGGTGAAATCCACCGTCCTCCGCTTGTTTCCAGGACTCAGCTAGGAGTAATAATCGTTTTGTTTCTG TTATGGACGCCGTACGCTGTGAAGAAGGTTATTGCAGGGCAGACGTTGCTTCACGATCCAAAAATCTGGCTTGCTGGATCGGTGTTTGTTTACTTCTTCA GCGTCTCTGGTGCGATGCATAACATTATTCGTAAGATGCCTATGTTTATGGTGGATCGTAACGATCCGAACAAGCTGGTGTTCTTCTACCAAGGGTCTGG GATGCAGCTGGGAGCTGAAGGTTTTGCTGTTGGGTTTCTTTATACTGTTGTTGGGTTGCTGCTAGCTTTGATGACTCATGGACTTGATAAGGTGAAGAAC GTAACTACTCAGAGGGTGACGATGATTGCTGCATTGTTGGTTTGCTTCTGGTCAGTCAACAAGGTTGTGTATTTGGATAATTGGAAGACTGGTTATGGGA TTCATACCTTCTGGCCTAGGAGCTGGAGCTGA
AA sequence Show only first row Show all	>Lus10018363 pacid=23162129 polypeptide=Lus10018363 locus=Lus10018363.g ID=Lus10018363.BGIv1.0 annot-version=v1.0 MAISTKKSDQHFLLLLLTIAAVFTVCAATSSSDLVSELLSLQSQSKSGVIHFDDHSISRFLTSTKPPRPYSLLVFFDATQLHDKSELRLKELHREFSILS SSFIANNPNNGKLFFCEIEFKESQSSFSLFGVQSLPHIRLISPDVKNPKQSEQMDQGDFSRMAESMAEFVETRTKITVGEIHRPPLVSRTQLGVIIVLFL LWTPYAVKKVIAGQTLLHDPKIWLAGSVFVYFFSVSGAMHNIIRKMPMFMVDRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTVVGLLLALMTHGLDKVKN VTTQRVTMIAALLVCFWSVNKVVYLDNWKTGYGIHTFWPRSWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	0	1
AT3G28720			unknown protein		Lus10033020 [exp]	1.0	0.9600
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	1.4	0.9582
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	4.9	0.9212
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	5.2	0.9303
AT2G32380			Transmembrane protein 97, pred...		Lus10039668 [exp]	5.2	0.9018
AT2G22900			Galactosyl transferase GMA12/M...		Lus10011550 [exp]	5.3	0.8941
AT3G10290			Nucleotide-sugar transporter f...		Lus10018043 [exp]	5.6	0.8784
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	6.7	0.9198
AT1G67330			Protein of unknown function (D...		Lus10011360 [exp]	7.7	0.9006
AT5G41460			Protein of unknown function (D...		Lus10024663 [exp]	8.2	0.8915

Compare expression of checked genes

Lus10018363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.