Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54770 379 / 2e-133 THI4, TZ, THI1 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007646 [exp] 451 / 9e-162 AT5G54770 550 / 0.0 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025200 [exp] 392 / 7e-139 AT5G54770 541 / 0.0 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1) Potri.004G020500 [exp] 392 / 1e-138 AT5G54770 505 / 0.0 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1) Potri.011G134900 [exp] 381 / 4e-134 AT5G54770 543 / 0.0 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01946 [flax] [poplar] Thi4 Thi4 family
Representative CDS sequence Show only first row Show all	>Lus10018364 pacid=23162206 polypeptide=Lus10018364 locus=Lus10018364.g ID=Lus10018364.BGIv1.0 annot-version=v1.0 ATGGTCGTCAGGAAGCCCGCTCACTTGTTCCTCGACGAGATCGAAGTTGAATACGACGAGCAGGACGACTACGTGGTGATCAAGCACGCTGCCCTGTTCA CCTCAACGATCATGAGCAAACTGCTGGCGAAGCCGAACGTGAAGCTGTTCAACGCGGTGGCCGCGGAGGATCTGATCGTGAAGGGAGGAAGAGTGGGCGG AGTGGTGACCAACTGGGCGCTGGTTTCGATGAACCACGACACACAGTCGTGCATGGACCCCAATGTGATGGAGGCTAAGGTGGTCGTGAGTTCGTGCGGC CACGATGGGCCGTTTGGAGCCACGGGAGTGAAGAGGTTGAAGAGCATCGGGCTGATCGATAATGTCCCCGGGATGAAGGCTTTGGACATGAATGCGGCCG AGGATGCGATCGTTAGGCTGACTAGGGAGGTTGTCCCTGGAATGATCGTTACTGGGATGGAAGTTGCTGAGATTGATGGTGCTCCAAGAATGGGACCCAC ATTTGGGGCAATGATGATCTCCGGCCAGAAGGCGGCGCACTTGGCATTGAAGGCCTTGGGAGAGGAGAATGCTTTGGACGGAGCCGGAGGAGTTAACGGG AAGGTGCCCATCCCGGAGTTTGTCCTTGCCGAGGCCGACAACGGGGAGACTGTGGATGCTTAG
AA sequence Show only first row Show all	>Lus10018364 pacid=23162206 polypeptide=Lus10018364 locus=Lus10018364.g ID=Lus10018364.BGIv1.0 annot-version=v1.0 MVVRKPAHLFLDEIEVEYDEQDDYVVIKHAALFTSTIMSKLLAKPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG HDGPFGATGVKRLKSIGLIDNVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGEENALDGAGGVNG KVPIPEFVLAEADNGETVDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10018364 [exp]	0	1
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10007646 [exp]	1.0	0.9533
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	3.5	0.9254
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10017117 [exp]	4.0	0.9049
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	4.2	0.9250
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	4.5	0.9125
AT1G25550	GARP		myb-like transcription factor ...		Lus10021699 [exp]	5.0	0.9121
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	7.3	0.9094
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	7.9	0.9093
AT3G43110			unknown protein		Lus10020796 [exp]	7.9	0.8986
AT3G19660			unknown protein		Lus10033765 [exp]	8.1	0.8750

Compare expression of checked genes

Lus10018364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.