Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11545 498 / 9e-177 XTH8 xyloglucan endotransglucosylase/hydrolase 8 (.1) AT5G13870 283 / 1e-92 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT4G37800 282 / 4e-92 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT5G65730 280 / 3e-91 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT2G14620 271 / 1e-87 XTH10, XTR14 xyloglucan endotransglucosylase/hydrolase 10 (.1) AT2G06850 269 / 8e-87 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT5G57560 256 / 5e-82 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G57540 256 / 6e-82 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT4G03210 255 / 1e-81 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT5G57530 254 / 2e-81 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007645 [exp] 570 / 0 AT1G11545 496 / 2e-179 xyloglucan endotransglucosylase/hydrolase 8 (.1) Lus10011052 [exp] 285 / 9e-93 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10003022 [exp] 281 / 1e-91 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10040121 [exp] 278 / 1e-90 AT5G13870 493 / 5e-178 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10030923 [exp] 278 / 3e-90 AT5G13870 491 / 3e-177 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10039715 [exp] 271 / 1e-87 AT4G03210 441 / 1e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10039643 [exp] 271 / 1e-87 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10011597 [exp] 271 / 2e-87 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10018503 [exp] 266 / 2e-85 AT4G03210 439 / 9e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G021000 [exp] 521 / 0 AT1G11545 498 / 3e-180 xyloglucan endotransglucosylase/hydrolase 8 (.1) Potri.011G025800 [exp] 414 / 4e-145 AT1G11545 375 / 6e-133 xyloglucan endotransglucosylase/hydrolase 8 (.1) Potri.014G152700 [exp] 404 / 3e-140 AT1G11545 365 / 3e-128 xyloglucan endotransglucosylase/hydrolase 8 (.1) Potri.014G140300 [exp] 280 / 2e-91 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.007G008500 [exp] 280 / 4e-91 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.001G071000 [exp] 275 / 4e-89 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.003G159700 [exp] 275 / 5e-89 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.019G125000 [exp] 268 / 2e-86 AT4G03210 450 / 3e-161 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.009G083800 [exp] 266 / 6e-86 AT2G14620 454 / 1e-162 xyloglucan endotransglucosylase/hydrolase 10 (.1) Potri.005G201200 [exp] 263 / 1e-84 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus CL0004 [flax] [poplar] PF10235 [flax] [poplar] Cript Microtubule-associated protein CRIPT
Representative CDS sequence Show only first row Show all	>Lus10018365 pacid=23162132 polypeptide=Lus10018365 locus=Lus10018365.g ID=Lus10018365.BGIv1.0 annot-version=v1.0 ATGGCCACAACATCTCTCCCACCGGCGGCCACTTCCGCTGCCATTCTTGTGATTGCCGCCGCCGTTATGGCTGCAACCACGTCAGCACTGTCGAAAGGCG CTTTCGAAGACAACTTCAACATCATGTGGTCGAAGGAGCATTTCACAACCTCGGAAGACGGCCAGATCTGGTACCTATCAATGGACAAAGATACAGGATG TGGGTTCCAAACCAAGGAGATGTACAGATTCGGTTGGTTCAGCATGAAGCTGAAGCTTGTCGGCGGCGATTCCGCCGGTGTCGTCACTGCTTACTATATG TGTACAGAGAACGGGGCAGGGCCGACTAGGGACGAGATCGATTTTGAGTTCCTAGGGAACCGAACGGGCCAACCGTATTTGATTCAAACGAATATTTACA AGAACGGAACCGGAAACCGAGAAATGCGGCATGAGTTATGGTTCGATCCGACCGAAGATTTCCATTCTTACTCGGTTCTATGGAATGATCACCAGCTAGT ATTCTTCGTGGACAGGGTGCCGATCAGGGTGATGAAGAACAACGGGAAGTCGAACAACTTCTTCCCGAACGAGAAGCCGATGTACCTGTTCTCGAGCATA TGGAACGCGGACGACTGGGCGACGAGAGGAGGGCTGGAGAAGACGGACTGGAAGAAGTCGCCGTTCGTGTCGGCGTACAAGGACTTCAGCGTCGAGGGGT GCCAATGGGAGGATCCGTATCCGAAGTGTGTGTCGACGACGACGGAGAATTGGTGGGACCAGAAGGACGCGTGGTACTTGTCGGATTCGCAGAAGCTCGA TTTCGCATGGGTCGAGAGAAACATGGTGATCTACGATTACTGTAAGGATACTGAGCGGTTCCCCACGTTGCCGGAGGAGTGTTCTTTGAGCCCATGGGAA GTTGATCCATCTGCAGATGCTTGTTGGTCAACCTCTCGGACCAGGAAGTCGATCATACACAGCGATATCAAGCTCGTAGCAGAGTACAGAGAATTCTGCT CAGGAATGATTCGGATATGGGGCTTGAATAGTCATCTCTGCAGCAGGTTCACAGAAATAGCTAGCATTGTAGCTAACTGCAATGGGAAAAGCTTGAACAA GAGCAAGATAAATCGCCGCTCATCCCATCTCCGGAGAAGATCTGATCAGAAATCGCGATCTAGGCTACGGGAAGAATCAGGGAAGAAGGCACAGCTTAAT ACAATGGTGTGCGCTAAGTGCGAGAAGAAGCTGGCGAAGGTGATAGTCCCGGACAAGTGGAAGGAAGGAGCTTCCAACACTAACGAAAGCGGCGGCCGGA AGATCAACGAGAACAAACTCCTCTCTAAGAAGAACAGATGGACACCTTATGGAGTGACCAAGTGCATGATCTGCAAGCAGCAAGTGCACCAAGATGGCAA GTACTGCCACACCTGTGCATATACCAAAGGAGTTTGTGCGATGTGCGGTAAACAAGTTCTAGACACGAAGATATACAAGCAAAGCAACGTATGA
AA sequence Show only first row Show all	>Lus10018365 pacid=23162132 polypeptide=Lus10018365 locus=Lus10018365.g ID=Lus10018365.BGIv1.0 annot-version=v1.0 MATTSLPPAATSAAILVIAAAVMAATTSALSKGAFEDNFNIMWSKEHFTTSEDGQIWYLSMDKDTGCGFQTKEMYRFGWFSMKLKLVGGDSAGVVTAYYM CTENGAGPTRDEIDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHELWFDPTEDFHSYSVLWNDHQLVFFVDRVPIRVMKNNGKSNNFFPNEKPMYLFSSI WNADDWATRGGLEKTDWKKSPFVSAYKDFSVEGCQWEDPYPKCVSTTTENWWDQKDAWYLSDSQKLDFAWVERNMVIYDYCKDTERFPTLPEECSLSPWE VDPSADACWSTSRTRKSIIHSDIKLVAEYREFCSGMIRIWGLNSHLCSRFTEIASIVANCNGKSLNKSKINRRSSHLRRRSDQKSRSRLREESGKKAQLN TMVCAKCEKKLAKVIVPDKWKEGASNTNESGGRKINENKLLSKKNRWTPYGVTKCMICKQQVHQDGKYCHTCAYTKGVCAMCGKQVLDTKIYKQSNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10018365 [exp]	0	1
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10017696 [exp]	1.4	0.9765
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10017655 [exp]	4.6	0.9700
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	5.5	0.9702
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	7.2	0.9684
					Lus10024349 [exp]	8.9	0.9594
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	9.2	0.9652
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	10.9	0.9623
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	11.2	0.9640
AT3G11590			unknown protein		Lus10013311 [exp]	14.1	0.9391
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Lus10036524 [exp]	19.3	0.9438

Compare expression of checked genes

Lus10018365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.