Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05050 452 / 2e-164 UBQ11 ubiquitin 11 (.1.2.3.4) AT4G02890 452 / 2e-164 UBQ14 Ubiquitin family protein (.1.2.3.4) AT5G03240 453 / 2e-163 UBQ3 polyubiquitin 3 (.1.2.3) AT4G05320 453 / 2e-163 UBQ10 polyubiquitin 10 (.1.2.3.4.5.6) AT5G20620 453 / 3e-162 UBQ4 ubiquitin 4 (.1) AT1G65350 442 / 9e-159 UBQ13 ubiquitin 13 (.1) AT1G55060 429 / 4e-155 UBQ12 ubiquitin 12 (.1) AT5G37640 423 / 2e-151 UBQ9 ubiquitin 9 (.1) AT3G09790 365 / 5e-124 UBQ8 ubiquitin 8 (.1) AT1G31340 247 / 4e-84 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008873 [exp] 155 / 2e-48 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 155 / 5e-48 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 155 / 5e-48 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10022411 [exp] 76 / 1e-15 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10018104 [exp] 59 / 4e-10 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10010493 [exp] 59 / 5e-10 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10034563 [exp] 56 / 7e-09 AT5G42220 444 / 3e-148 Ubiquitin-like superfamily protein (.1) Lus10007641 [exp] 55 / 9e-09 AT4G05230 145 / 1e-42 Ubiquitin-like superfamily protein (.1) Lus10027323 [exp] 52 / 6e-08 AT4G12570 72 / 5e-14 ubiquitin protein ligase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G026600 [exp] 453 / 2e-164 AT4G05050 452 / 3e-164 ubiquitin 11 (.1.2.3.4) Potri.004G021500 [exp] 453 / 2e-163 AT4G02890 604 / 0.0 Ubiquitin family protein (.1.2.3.4) Potri.006G129600 [exp] 451 / 2e-162 AT5G20620 600 / 0.0 ubiquitin 4 (.1) Potri.017G036800 [exp] 453 / 3e-162 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.001G418500 [exp] 453 / 3e-162 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.001G263000 [exp] 453 / 3e-162 AT4G05320 752 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.007G123300 [exp] 453 / 3e-162 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.017G135600 [exp] 447 / 5e-161 AT4G02890 597 / 0.0 Ubiquitin family protein (.1.2.3.4) Potri.011G134200 [exp] 454 / 6e-161 AT4G05320 900 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.004G174175 [exp] 320 / 3e-105 AT4G05320 638 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Lus10018367 pacid=23162109 polypeptide=Lus10018367 locus=Lus10018367.g ID=Lus10018367.BGIv1.0 annot-version=v1.0 ATGCAAATCTTTGTGAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTGGAGAGCAGTGACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGG AGGGAATCCCCCCGGACCAGCAGAGGTTGATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGTACCTTGGCCGATTACAACATTCAGAAGGAGTCTACCCT CCATCTCGTCCTAAGGCTGAGGGGAGGTATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGAGCAGCGACACCATTGAC AATGTCAAGGCCAAAATCCAAGACAAGGAAGGGATACCACCGGACCAGCAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAGGACGGCAGGACTCTGGCGG ACTACAACATCCAGAAGGAATCAACCCTTCACCTTGTCTTACGTCTCCGTGGAGGTATGCAGATCTTTGTCAAGACCCTGACCGGAAAGACAATCACTTT GGAGGTGGAGAGCAGCGACACCATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGGATCCCCCCGGATCAGCAGAGGTTGATCTTCGCCGGCAAG CAGCTGGAGGATGGCAGGACTCTTGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGCTGCTAA
AA sequence Show only first row Show all	>Lus10018367 pacid=23162109 polypeptide=Lus10018367 locus=Lus10018367.g ID=Lus10018367.BGIv1.0 annot-version=v1.0 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTID NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK QLEDGRTLADYNIQKESTLHLVLRLRGGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Lus10018367 [exp]	0	1
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10018366 [exp]	1.0	0.9106
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	4.0	0.8452
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10010328 [exp]	4.9	0.8178
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	7.1	0.8199
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10009435 [exp]	7.6	0.7804
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	8.4	0.8157
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10039161 [exp]	8.9	0.8028
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	11.6	0.8084
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	13.4	0.8178
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10040662 [exp]	16.6	0.7872

Compare expression of checked genes

Lus10018367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.