Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20870 151 / 4e-42 HSP20-like chaperones superfamily protein (.1) AT1G54840 106 / 4e-26 HSP20-like chaperones superfamily protein (.1.2) AT1G76440 71 / 4e-15 HSP20-like chaperones superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007642 [exp] 394 / 4e-139 AT1G20870 145 / 2e-40 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G005400 [exp] 143 / 1e-39 AT1G20870 179 / 1e-51 HSP20-like chaperones superfamily protein (.1) Potri.013G024750 [exp] 80 / 1e-16 AT1G54850 187 / 1e-57 HSP20-like chaperones superfamily protein (.1) Potri.013G024900 [exp] 76 / 3e-15 AT1G54850 175 / 6e-52 HSP20-like chaperones superfamily protein (.1) Potri.001G243100 [exp] 64 / 2e-12 AT1G76440 153 / 9e-49 HSP20-like chaperones superfamily protein (.1.2.3) Potri.013G024600 [exp] 40 / 0.0008 AT1G54850 216 / 2e-71 HSP20-like chaperones superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018368 pacid=23162183 polypeptide=Lus10018368 locus=Lus10018368.g ID=Lus10018368.BGIv1.0 annot-version=v1.0 ATGAAACAACAAGACCAACAAGGAACACCCATCGCCGCCGAAGACGACAAGCTCTTCATCGCGAATTTCATCGTCGCCAATTGCTTAGGCCCCGACGTCT ACGCCGACGAACCCCCAAACATCTCCGCCGCTCAACGGCTATCCCAACGGTTCCCTCCCTACACTACTAACCACTTAGGCCAAAGCTCACTCACCGTCAC CCAAATCCAAAGCCTATACTATTACATCCTCAGAAACTCAATCAACCCGTCTCTGATTTTTGACCCGACCCAGTTTCACTTTTACCTCAAAGGTAAATTG ATTTCACCGTACCCTTCTGCCGCCGATTTCACCTCCTTCTTCCCACTCCATATCCATAATCAGAAGCTGTCCTCGACCACTGATCAACATGGAGTAGTTG TGATCAAGGGTTTAGTAGTAATTCACGACCCTGCCGCAGGTTGGGTCAACCGCGAGGAGCTTGACCGGTTTATATTGCTGACCGGGTTGGTTGACTTGAA GGTCGATAGGGATTCGTGGTTAAGCTATAACCGGACCATCCATGAAAACCAAAGGCCGAATTTGGGTTTGGTTGATGAGACTAACGAAATTACGACTATG ACGACGGTGATTGTTCATGGAAAACCGGTCACGTTCGAGCTGTTCGGGTTATCGTGGGATCAATTGGTCGTGATTGGAATCGGTTCGACCTCTTACCTTT TTCGGGTTGCAATTCCTCCTCTCCCCGACAATTCTCGTGGATTGAGCTGCGAGGTATCATGGGATGGAGAGGTGGAAATCAATCACTCGGGAGGGTTAAC ATTTACGACGTCGTTTAATCTTCCCGGACATGTGGATCCGCGGCTGTTCTCGCCCAACCTCAAACGCGACCGTATTTTCGAAGCAGTTATCGTTAAAACA CAAAGACAGATCCGGAATAGTTCAATGTAA
AA sequence Show only first row Show all	>Lus10018368 pacid=23162183 polypeptide=Lus10018368 locus=Lus10018368.g ID=Lus10018368.BGIv1.0 annot-version=v1.0 MKQQDQQGTPIAAEDDKLFIANFIVANCLGPDVYADEPPNISAAQRLSQRFPPYTTNHLGQSSLTVTQIQSLYYYILRNSINPSLIFDPTQFHFYLKGKL ISPYPSAADFTSFFPLHIHNQKLSSTTDQHGVVVIKGLVVIHDPAAGWVNREELDRFILLTGLVDLKVDRDSWLSYNRTIHENQRPNLGLVDETNEITTM TTVIVHGKPVTFELFGLSWDQLVVIGIGSTSYLFRVAIPPLPDNSRGLSCEVSWDGEVEINHSGGLTFTTSFNLPGHVDPRLFSPNLKRDRIFEAVIVKT QRQIRNSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20870			HSP20-like chaperones superfam...		Lus10018368 [exp]	0	1
AT1G62420			Protein of unknown function (D...		Lus10003258 [exp]	2.2	0.9779
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10017333 [exp]	4.2	0.9649
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10032654 [exp]	5.2	0.9544
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	5.8	0.9709
					Lus10041164 [exp]	7.5	0.9613
AT5G39160			RmlC-like cupins superfamily p...		Lus10021980 [exp]	9.9	0.9576
AT5G09360		LAC14	laccase 14 (.1)		Lus10041067 [exp]	12.6	0.9595
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	16.6	0.9445
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10012494 [exp]	17.2	0.8743
AT1G77100			Peroxidase superfamily protein...		Lus10028631 [exp]	18.8	0.8987

Compare expression of checked genes

Lus10018368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.