Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05230 143 / 5e-44 Ubiquitin-like superfamily protein (.1) AT4G03370 83 / 7e-20 Ubiquitin family protein (.1) AT4G02950 71 / 2e-15 CRRJ Ubiquitin family protein (.1) AT4G03360 71 / 2e-15 Ubiquitin family protein (.1) AT4G03350 67 / 4e-14 EVE1 ETERNALLY VEGETATIVE PHASE 1, ubiquitin family protein (.1) AT2G32350 61 / 3e-12 Ubiquitin-like superfamily protein (.1) AT4G05310 54 / 2e-09 Ubiquitin-like superfamily protein (.1) AT4G05260 47 / 4e-07 Ubiquitin-like superfamily protein (.1) AT4G02970 45 / 3e-06 AT7SL-1 7SL RNA1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007641 [exp] 218 / 1e-72 AT4G05230 145 / 1e-42 Ubiquitin-like superfamily protein (.1) Lus10039679 [exp] 55 / 8e-10 AT2G32350 239 / 1e-79 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G022400 [exp] 143 / 2e-43 AT4G05230 144 / 1e-42 Ubiquitin-like superfamily protein (.1) Potri.017G037600 [exp] 62 / 2e-12 AT2G32350 294 / 4e-101 Ubiquitin-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018369 pacid=23162114 polypeptide=Lus10018369 locus=Lus10018369.g ID=Lus10018369.BGIv1.0 annot-version=v1.0 ATGGACGGGATCGCGGTCAACAGGCTGGTCGTTCAATCCAACGGCGGATCCGAGCTCCACGATAACCTGACATTACGAGACTTACGATCTCATCGACAAC AGCGCGGTCTTCGTCCTCAGACCGGATTGTCGTCGAAGAAGATGAAGCTGCTGGTGCTGACCAAGAGCGGGACCAAGAAAGTTCCCGTGGAGGTGAACGC AGGGGATAATGTTGGGGAGCTGAGAAAGGAATTACAGAGGATGCAGCAGAAGCTTCAGTTTCCTCTGCCGCAAGAAGGGTATTTTTTCATATATAAACAG AATGTCATGGAAGACGACCAGTCGTTTCGTTGGCACCATGTTGGCCATGGGGATACCATTGAGATCTTCAATGGTAGTGTTACTGGTGGATCGTAA
AA sequence Show only first row Show all	>Lus10018369 pacid=23162114 polypeptide=Lus10018369 locus=Lus10018369.g ID=Lus10018369.BGIv1.0 annot-version=v1.0 MDGIAVNRLVVQSNGGSELHDNLTLRDLRSHRQQRGLRPQTGLSSKKMKLLVLTKSGTKKVPVEVNAGDNVGELRKELQRMQQKLQFPLPQEGYFFIYKQ NVMEDDQSFRWHHVGHGDTIEIFNGSVTGGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05230			Ubiquitin-like superfamily pro...		Lus10018369 [exp]	0	1
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10034048 [exp]	4.2	0.7577
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10031614 [exp]	14.5	0.6870
AT5G23510			unknown protein		Lus10029154 [exp]	20.9	0.7171
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10026165 [exp]	23.0	0.7202
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10029518 [exp]	27.7	0.6845
					Lus10036765 [exp]	34.5	0.6921
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	37.8	0.6921
AT2G16190			unknown protein		Lus10011284 [exp]	40.8	0.6921
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	43.6	0.6921
					Lus10006395 [exp]	46.3	0.6921

Compare expression of checked genes

Lus10018369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.