Plant FIBer expression Database

Lus10018371 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G15170 798 / 0 TDP1 tyrosyl-DNA phosphodiesterase 1, tyrosyl-DNA phosphodiesterase-related (.1)
AT5G07400 71 / 1e-12 FHA forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032515
[exp]
59 / 1e-08 AT5G07400 931 / 0.0 forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
Lus10043015
[exp]
49 / 9e-06 AT5G07400 608 / 0.0 forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G022500
[exp]
823 / 0 AT5G15170 808 / 0.0 tyrosyl-DNA phosphodiesterase 1, tyrosyl-DNA phosphodiesterase-related (.1)
Potri.012G111800
[exp]
64 / 3e-10 AT5G07400 881 / 0.0 forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0479 PLD PF06087 Tyr-DNA_phospho Tyrosyl-DNA phosphodiesterase
Representative CDS sequence
>Lus10018371 pacid=23162117 polypeptide=Lus10018371 locus=Lus10018371.g ID=Lus10018371.BGIv1.0 annot-version=v1.0
ATGGCGAAATCACAGATCGGCTATTTGGTTCCCTTGAAATCGACATTAGAGGAAGTTGACACTTCGCTACCGAAGCTACCGCTCTCGAAAGGCTCAAACT
CCATCGGACGGGAAACTCTTTCCCTGACCGACAAAAGAATTAGCCGGAACCATGTCACTCTCATCGTTTCGGCCACTGGCTCAGCTCATCTATCCGTGGA
CGGTACGAATCCTGTTATTGTGAATTCGGGAGAGGGAAGAGAGAAACTAGGCCGAGGAGAGAACAAGTTGATTAGGAATGGAGATGTTATAGAGCTGATC
CCTGGCCACCATTTCTTCAAGTACCTTCGGGACGCAGGCGGTGGTGATGATGGTGCTAGTTCGTCTTCTCTCCCGAAGAGAGCTTCTAATGGCGGGAATG
CGACAGAATCTAAGAGAATCCGGCACTCGAGTGTTGCTACTAGTAGCTTCAATTTGTGGGCGCAGGGGGATATTGAGGAACCCATACGCGATTTTCGAGT
TCCCGAGGATAAGCTACCACACACTTTTCGGCTTTTGAAGGTGAAAGAGCTGCCTCAATGGGCAAACACCTCTGCTGTTTCTATATCCGATGTGATTCAG
GGGGATATTCAAGTTGCTATACTGTCGAATTACATGGTGGATATAGACTGGTTGATGCCTGCATGCCCAGCTCTGCGGAAAGTTCCTCACGTCTTAGTTC
TTCATGGGGAGGGTGATGGCAGAGTTGAAATGATAAAGAGAAGCAAGCCAGCTAATTGGATTCTACACAAGCCACCGCTTCCTGTTTCATTCGGGACGCA
CCATTCAAAGGCCATGTTTCTTGTCTATCCTAAAGGTGTCAGAGTTATTGTCCACACAGCGAATCTTATTTATGTTGACTGGAACAACAAGACTCAAGGT
CTATGGATGCAAGATTTCCCCTGGAAGGATGAAAATAATGCATACAATGGTTGCGGGTTTGAAAGTGATCTCCTTGATTATCTTGGTGCATTAAAGTGGC
CCGAGTTCACGGTTAGTCTACCATCTTTGGGAAGTTTCAAGATCAACGCTTCTTTCTTCAAAAAGTTCGATTATAGCGACTCACGGGTTAGGCTAATTGC
TTCTGTGCCTGGATATCACACTGGAGCTAATATGAAGAAGTGGGGGCATATGAAGCTAAAAGCTATCTTACAGGAATGCGTTTTTGACAAAGAATTCAAA
AGCTCTCCTCTAGTATATCAGTTTTCCTCCCTTGGATCCCTCGACGAGAAATGGATGACTGAGCTGGCGACCTCCATGTCATCAGGAGTCTCGGAAGATA
AAAAACCACTCGGTCTTGGAGTTCCTCGAATTGTATGGCCTACTGTGGAAGCTGTCAGATGTTCTTTAGAGGGTTATGCAGCTGGAAACGCAGTTCCAAG
TCCACTAAAGAATGTGGACAAAGTTCTTAAAGAATTCTGCAGTCGGGCAATGCCACATATCAAGACTTTCGCACGCTATAGTGGCCAAAGACTCGCATGG
TTTCTACTGACCTCCGCGAATCTCAGCAAAGCTGCTTGGGGAGCCTTACAGAAGAATAATTCACAGCTGATGATCCGTTCTTACGAGCTCGGCGTGCTCT
TTCTTCCATCTCAAGGAAAACAACAACAAAATGGCCGTTTATTTTCATGCACAAGCAACAACGTTTCATCATCTCAGGACGAGGAATGCAGAACTTCACC
AAGAACAGAACTGGTGACACTGAAAATATGGGAAGGGACAGAAGACGTTCCATCATCATCGTCCCAAGTGATCCGGTTACCTGTCCCGTACGAGCTCCCT
CCTCAGCCTTATGCACGTGAAGATGTGCCTTGGTCATGGGACAGGAACTACAGCAAGAAGGACGTGTACGGTCAAGTTTGGCATAGGTGA
AA sequence
>Lus10018371 pacid=23162117 polypeptide=Lus10018371 locus=Lus10018371.g ID=Lus10018371.BGIv1.0 annot-version=v1.0
MAKSQIGYLVPLKSTLEEVDTSLPKLPLSKGSNSIGRETLSLTDKRISRNHVTLIVSATGSAHLSVDGTNPVIVNSGEGREKLGRGENKLIRNGDVIELI
PGHHFFKYLRDAGGGDDGASSSSLPKRASNGGNATESKRIRHSSVATSSFNLWAQGDIEEPIRDFRVPEDKLPHTFRLLKVKELPQWANTSAVSISDVIQ
GDIQVAILSNYMVDIDWLMPACPALRKVPHVLVLHGEGDGRVEMIKRSKPANWILHKPPLPVSFGTHHSKAMFLVYPKGVRVIVHTANLIYVDWNNKTQG
LWMQDFPWKDENNAYNGCGFESDLLDYLGALKWPEFTVSLPSLGSFKINASFFKKFDYSDSRVRLIASVPGYHTGANMKKWGHMKLKAILQECVFDKEFK
SSPLVYQFSSLGSLDEKWMTELATSMSSGVSEDKKPLGLGVPRIVWPTVEAVRCSLEGYAAGNAVPSPLKNVDKVLKEFCSRAMPHIKTFARYSGQRLAW
FLLTSANLSKAAWGALQKNNSQLMIRSYELGVLFLPSQGKQQQNGRLFSCTSNNVSSSQDEECRTSPRTELVTLKIWEGTEDVPSSSSQVIRLPVPYELP
PQPYAREDVPWSWDRNYSKKDVYGQVWHR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G15170 TDP1 tyrosyl-DNA phosphodiesterase ... Lus10018371
[exp]
0 1
AT3G05740 RECQI1 RECQ helicase l1 (.1) Lus10042451
[exp]
1.0 0.8311
AT3G58560 DNAse I-like superfamily prote... Lus10012293
[exp]
8.2 0.8253
AT5G54280 ATMYOS1, ATM4, ... ARABIDOPSIS THALIANA MYOSIN 1,... Lus10038576
[exp]
10.1 0.8197
AT1G22800 S-adenosyl-L-methionine-depend... Lus10033838
[exp]
10.8 0.8028
AT4G30870 ATMUS81 ARABIDOPSIS THALIANA MMS AND U... Lus10039566
[exp]
11.8 0.7897
AT4G21660 proline-rich spliceosome-assoc... Lus10018475
[exp]
19.0 0.7997
AT3G63150 ATCBG, MIRO2 CALCIUM BINDING GTP-ASE, MIRO-... Lus10022034
[exp]
19.4 0.7393
AT5G15540 EMB2773, ATSCC2 EMBRYO DEFECTIVE 2773, ARABIDO... Lus10032966
[exp]
20.1 0.7739
AT1G16540 ACI2, ABA3, SIR... SIRTINOL RESISTANT 3, LOW OSMO... Lus10031190
[exp]
21.9 0.7553
AT2G03150 EMB1579 embryo defective 1579, ATP/GTP... Lus10030445
[exp]
24.2 0.8007

Lus10018371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.