Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21200 417 / 5e-147 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 267 / 6e-88 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT5G58660 168 / 4e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 160 / 2e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G05600 157 / 9e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 154 / 6e-44 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 154 / 7e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 154 / 7e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25420 154 / 8e-44 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G62380 151 / 3e-43 ATACO2, ACO2 ACC oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007640 [exp] 641 / 0 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006759 [exp] 458 / 9e-163 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10029081 [exp] 356 / 2e-122 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 355 / 3e-122 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013069 [exp] 354 / 3e-121 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10030567 [exp] 350 / 2e-120 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10008824 [exp] 162 / 5e-47 AT1G49390 410 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011985 [exp] 157 / 9e-45 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10006518 [exp] 155 / 7e-44 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G022800 [exp] 496 / 7e-178 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G026700 [exp] 468 / 4e-167 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G418200 [exp] 360 / 3e-124 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.010G096800 [exp] 352 / 7e-121 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134000 [exp] 342 / 2e-117 AT4G21200 340 / 1e-116 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G145300 [exp] 341 / 1e-116 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134100 [exp] 326 / 4e-111 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G278200 [exp] 198 / 5e-61 AT5G58660 312 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 167 / 7e-49 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 164 / 1e-47 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10018372 pacid=23162191 polypeptide=Lus10018372 locus=Lus10018372.g ID=Lus10018372.BGIv1.0 annot-version=v1.0 ATGGAGATCGACCCACCTCTATACAACACTTACAAGGACCTCTTGGAAAGTCACCATGATCGTGACACCATCCCACCGGCCGACGCAGCTCCTCCTCTCG AGCTGCCGGTGATCGACCTGTCCAGGCTGATCATCAATAGCGACGAGAGGGAGAGCTGCAAAAGTGAGATTGCGAGGGCGTCGGAGGAGTGGGGCTTCTT CCAGGTGGTGAACCACGGGATATCTCGCAAGATTTTGGACGGGATGAGGGAGGAGCAAGTGAAGGTGTTCAAGCAGCCGTTTGATATGAAGAGGGAAGAG GATAAGTACTTGAAATTCTCGCCGGGGACTTACCGGTGGGGCACACCGTCGGCGACCAGTTTGAAGCAGCTCGCTTGGTCGGAGGCTTTCCATATTCCTA TGTCGGATATCTCCCCGCCGGCGGTTAACGGCCCGTTCGGTAATAGCCTCAGCTCGACAATGGAGCAGTTTGGGGCGACGGTGGCCGATCTGGCGCAGAA GCTGGCCGGGATACTGGCGGAGAGAGTGGGGAGGAAGTCGAGCTTCTTCAAGGAGAAGTGTTTAGCGAGCAGTTGTTACCTTAGGATGAACAGATACCCA CCTTGTCCGATGTCGTCGGAGGTATTCGGAATGATGCCGCACACCGACAGCGACTTCCTGACAATTCTGCACCAAGATCAAGTCGGCGGCCTCCAGTTGG TCCGAGATGGCAAGTGGTTCGCCGTCAAGCCTGATCCCCGAGCTCTCATCATCAACGTTGGCGACCTTTTCCAGGCGTGGAGCAACGATGTGTACAAGAG CGTGGTGCATCGAGTGGTGGCAAACCCACGGGTGGAGAGGTTCTCGACGGCTTACTTCTTCTGCCCATCGTACGACACCGAGATCGAGAGCGACTGTGAA CCTTCCGTGTATAAAAAATTCAGCTTTGAAGAATATAGAAAACAGGTTCAGACCGATGTCCAAAAGTTAGGATATAAGATTTGTCTCCCCCATTATTACT TTGTAGAATAG
AA sequence Show only first row Show all	>Lus10018372 pacid=23162191 polypeptide=Lus10018372 locus=Lus10018372.g ID=Lus10018372.BGIv1.0 annot-version=v1.0 MEIDPPLYNTYKDLLESHHDRDTIPPADAAPPLELPVIDLSRLIINSDERESCKSEIARASEEWGFFQVVNHGISRKILDGMREEQVKVFKQPFDMKREE DKYLKFSPGTYRWGTPSATSLKQLAWSEAFHIPMSDISPPAVNGPFGNSLSSTMEQFGATVADLAQKLAGILAERVGRKSSFFKEKCLASSCYLRMNRYP PCPMSSEVFGMMPHTDSDFLTILHQDQVGGLQLVRDGKWFAVKPDPRALIINVGDLFQAWSNDVYKSVVHRVVANPRVERFSTAYFFCPSYDTEIESDCE PSVYKKFSFEEYRKQVQTDVQKLGYKICLPHYYFVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10018372 [exp]	0	1
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000405 [exp]	3.2	0.8096
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10017961 [exp]	11.2	0.8353
AT5G57345			unknown protein		Lus10001438 [exp]	12.9	0.8439
AT1G24110			Peroxidase superfamily protein...		Lus10004234 [exp]	14.1	0.8105
					Lus10014003 [exp]	15.0	0.8036
AT2G35612			unknown protein		Lus10033285 [exp]	15.2	0.7729
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10017977 [exp]	17.1	0.8225
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10028822 [exp]	17.7	0.8025
AT2G46640			unknown protein		Lus10005993 [exp]	18.8	0.8139
AT1G02630			Nucleoside transporter family ...		Lus10030104 [exp]	22.4	0.8226

Compare expression of checked genes

Lus10018372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.