Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21215 87 / 2e-21 unknown protein AT4G39900 43 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007639 [exp] 355 / 5e-127 AT4G21215 83 / 1e-19 unknown protein Lus10006757 [exp] 175 / 8e-56 AT4G21215 86 / 6e-21 unknown protein Lus10020063 [exp] 174 / 3e-55 AT4G21215 85 / 1e-20 unknown protein Lus10024045 [exp] 45 / 8e-06 AT4G39900 131 / 4e-37 unknown protein Lus10041703 [exp] 41 / 0.0002 AT4G39900 118 / 2e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G026900 [exp] 150 / 6e-46 AT4G21215 91 / 2e-22 unknown protein Potri.004G023000 [exp] 141 / 2e-42 AT4G21215 108 / 2e-29 unknown protein Potri.008G145000 [exp] 52 / 1e-08 AT4G39900 45 / 3e-06 unknown protein Potri.010G097100 [exp] 52 / 2e-08 AT4G21215 48 / 4e-07 unknown protein Potri.007G093200 [exp] 40 / 0.0004 AT4G39900 171 / 9e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018373 pacid=23162085 polypeptide=Lus10018373 locus=Lus10018373.g ID=Lus10018373.BGIv1.0 annot-version=v1.0 ATGTCGTCGACGACGACGACGACGACCCAGAAAATCTCGGTGGTCGATCATATCAACGGTTTCCAGTATACTCCTGAGAGATCCTCGTCGCAGGATAACT TCGTTATCGACATGATGGAAGATCTTTCCCATAACAAAGAAAGCTACCCGAATTCCAGAATCACGCTGCAGAGGAGTCTGTCTCGAAAAGGGTTGGTTCG AGGAGGGGGCGGTTCGGAGAAGAAGGCTGCTGTTGAATCTTCTGTAGTTTCTGGAGCTTGTTCATCGCCAAGAACAGGAGCAGCTTTGGTAGGAAGTAGC AGCACGCCTGAAAAGGGAATCTCTGCTGTGGGGCAAGGGAATCATCAGATTACTATAACCTCCGTCCCCGGAGGGAACATCAAGGCTACTGCTGCCGGCG GTGACCAAGGAGGAAGATGCACTACCAGAAGGAACAGTTTCAAGCGTTGTCAAGCTCCCTGGCTTCTTGATCCTAGAAAAGTCGTCATCTTTTTCGCCAC CCTGTCAAGCATGGGGACATTGCTGCTGATTTACTTCACACTGTCCATTGGCAGAGTCCAGTCAGAAGAATCTGCTGCTGCCATGGAATGA
AA sequence Show only first row Show all	>Lus10018373 pacid=23162085 polypeptide=Lus10018373 locus=Lus10018373.g ID=Lus10018373.BGIv1.0 annot-version=v1.0 MSSTTTTTTQKISVVDHINGFQYTPERSSSQDNFVIDMMEDLSHNKESYPNSRITLQRSLSRKGLVRGGGGSEKKAAVESSVVSGACSSPRTGAALVGSS STPEKGISAVGQGNHQITITSVPGGNIKATAAGGDQGGRCTTRRNSFKRCQAPWLLDPRKVVIFFATLSSMGTLLLIYFTLSIGRVQSEESAAAME

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21215			unknown protein		Lus10018373 [exp]	0	1
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10006335 [exp]	1.7	0.8660
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	5.1	0.8830
AT2G37480			unknown protein		Lus10024420 [exp]	5.5	0.8730
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10041879 [exp]	5.7	0.8572
AT3G20340			unknown protein		Lus10021518 [exp]	6.3	0.8371
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10030137 [exp]	7.5	0.8463
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10031344 [exp]	7.7	0.8508
AT1G79660			unknown protein		Lus10024088 [exp]	11.0	0.8502
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	11.6	0.8266
AT2G38480			Uncharacterised protein family...		Lus10012216 [exp]	16.3	0.8177

Compare expression of checked genes

Lus10018373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.