Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) AT4G11290 360 / 7e-125 Peroxidase superfamily protein (.1) AT1G05260 359 / 3e-124 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT3G21770 342 / 2e-117 Peroxidase superfamily protein (.1) AT1G05240 331 / 3e-113 Peroxidase superfamily protein (.1) AT1G05250 331 / 3e-113 Peroxidase superfamily protein (.1) AT5G64120 281 / 2e-93 Peroxidase superfamily protein (.1) AT5G17820 272 / 2e-90 Peroxidase superfamily protein (.1) AT5G51890 271 / 7e-90 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007638 [exp] 615 / 0 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10006756 [exp] 477 / 1e-170 AT3G01190 379 / 3e-132 Peroxidase superfamily protein (.1) Lus10015127 [exp] 365 / 1e-126 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 365 / 1e-126 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027163 [exp] 353 / 1e-121 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10027164 [exp] 352 / 2e-121 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039681 [exp] 351 / 4e-121 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10039680 [exp] 345 / 8e-119 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10041250 [exp] 288 / 6e-96 AT2G39040 310 / 3e-104 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G027300 [exp] 443 / 2e-157 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 442 / 3e-157 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 431 / 7e-153 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 424 / 9e-150 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 397 / 2e-139 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 397 / 2e-139 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 397 / 2e-139 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 397 / 2e-139 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 397 / 3e-139 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 396 / 5e-139 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10018374 pacid=23162149 polypeptide=Lus10018374 locus=Lus10018374.g ID=Lus10018374.BGIv1.0 annot-version=v1.0 ATGGCTACTTCTTCTTTATCGAAGTACTTGATCTTGGCTTTGTTTTTTGGCCTCTTCACGATCTCAAACGCCCAACTCAAAGTGGGTTACTACTCAAAGT CTTGCCCTAATGCTGAGGCCATAGTCAAGAAGGAGATGGATCAAGTCATGTACATGGCTCCTTCCCTCGGCGGGCCCTTGGTCCGCATGCATTTCCACGA CTGCTTCGTCAGGGGTTGTGACGGTTCTGTTCTAATCACCTCGACGAAAAACAACCAAGCTGAAAAGGATGCGATCCCGAACCTCAGTTTGAGAGGGTTT GGAGTCATCGACCGCATAAAATACGCCCTAGAGAAGGCATGCCCTGGAATTGTGTCGTGCTCTGATATCATGGCTATCGTAGCTAGAGATGTTGTAGTTG CGATGAAAGGTCAGTACTGGGAAGTTGAAACAGGCAGGAGAGACGGACGAGTTTCGATCATGATGGACGCTCTAACCGGATCCCTCCCACCGCCATTTTC GAACATCTCGACCCTTATCTCGGCGTTCAAAGTCGTAGGACTCTCGGCCAAGGACTTGGTGGTCTTACAAGGCGCCCACACCATAGGAACCTCCCATTGC TCTTCCTTCACTAACAGAATCTACAACTTCACCGGCAAAGGTGATGTGGATCCGGCACTCGACTCCAACTATGTATCCAAGCTCAAGAGAAAATGTACGC CGTCCGATCAGACTACCTTGGTGGAGATGGACCCAGGGAGCTTCAAGACATTTGACAACGAGTACTACAAGCTGGTAGCTAAAAGGAGGGGTTTGTTCCA GTCCGACTCGGCACTGATGGATAACCCTTTAACCAAGGCTTACGTGGAGAAGTATGTGACAGTTGGATCGACTTTCTTGAAGGACTTTGGCGAGTCGATG GTCAGGATGGGGAGGATCGGTGTGCTTACTGGAAAGCAAGGTGAAATCAGGAAAGTCTGCTACAAGACTAATTAA
AA sequence Show only first row Show all	>Lus10018374 pacid=23162149 polypeptide=Lus10018374 locus=Lus10018374.g ID=Lus10018374.BGIv1.0 annot-version=v1.0 MATSSLSKYLILALFFGLFTISNAQLKVGYYSKSCPNAEAIVKKEMDQVMYMAPSLGGPLVRMHFHDCFVRGCDGSVLITSTKNNQAEKDAIPNLSLRGF GVIDRIKYALEKACPGIVSCSDIMAIVARDVVVAMKGQYWEVETGRRDGRVSIMMDALTGSLPPPFSNISTLISAFKVVGLSAKDLVVLQGAHTIGTSHC SSFTNRIYNFTGKGDVDPALDSNYVSKLKRKCTPSDQTTLVEMDPGSFKTFDNEYYKLVAKRRGLFQSDSALMDNPLTKAYVEKYVTVGSTFLKDFGESM VRMGRIGVLTGKQGEIRKVCYKTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01190			Peroxidase superfamily protein...		Lus10018374 [exp]	0	1
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	3.9	0.9505
AT1G55210			Disease resistance-responsive ...		Lus10017228 [exp]	5.5	0.9381
AT5G49040			Disease resistance-responsive ...		Lus10021082 [exp]	6.7	0.9369
AT4G30170			Peroxidase family protein (.1)		Lus10001442 [exp]	8.9	0.9356
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10020673 [exp]	9.2	0.9341
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003444 [exp]	10.5	0.9305
AT4G26010			Peroxidase superfamily protein...		Lus10005679 [exp]	13.5	0.8839
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	16.4	0.9323
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	17.1	0.9363
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	19.1	0.9352

Compare expression of checked genes

Lus10018374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.