Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17820 283 / 2e-94 Peroxidase superfamily protein (.1) AT3G03670 273 / 2e-90 Peroxidase superfamily protein (.1) AT4G26010 258 / 1e-84 Peroxidase superfamily protein (.1) AT5G24070 258 / 2e-84 Peroxidase superfamily protein (.1) AT1G05260 253 / 2e-82 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G42180 252 / 2e-82 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT2G43480 252 / 4e-82 Peroxidase superfamily protein (.1) AT4G11290 248 / 2e-80 Peroxidase superfamily protein (.1) AT5G22410 246 / 1e-79 RHS18 root hair specific 18 (.1) AT2G41480 244 / 6e-79 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013631 [exp] 290 / 6e-97 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10001324 [exp] 286 / 2e-95 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10005679 [exp] 277 / 5e-92 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10032511 [exp] 276 / 2e-91 AT5G22410 302 / 8e-102 root hair specific 18 (.1) Lus10043010 [exp] 274 / 1e-90 AT5G22410 300 / 9e-101 root hair specific 18 (.1) Lus10004859 [exp] 261 / 8e-86 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10015555 [exp] 258 / 2e-84 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10004804 [exp] 258 / 4e-84 AT5G24070 412 / 1e-144 Peroxidase superfamily protein (.1) Lus10020312 [exp] 267 / 7e-83 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110200 [exp] 277 / 4e-92 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.013G066800 [exp] 275 / 1e-90 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 265 / 2e-87 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 263 / 2e-86 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G132800 [exp] 261 / 2e-85 AT2G43480 446 / 2e-158 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 255 / 2e-83 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 254 / 4e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 254 / 4e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 254 / 4e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 254 / 4e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10018375 pacid=23162118 polypeptide=Lus10018375 locus=Lus10018375.g ID=Lus10018375.BGIv1.0 annot-version=v1.0 ATGGCTATAGCTTTGCTTTTCCTCATCAAGTTCCTTGTTGCATTCTCAACAACAGAAGCATCACTAGAGCTTCATTTCTACAGAAATTCATGCCCCCAAG CCGAAGCCATAGTCAAGAGCGCGATGAAGCGACATTTCAATAGGGACCCCTCGGTCCCTGCTGGCTTGCTCCGGTTGCATTTCCACGATTGCTTCATTCG TGGTTGTGACGGGTCAGTTCTGATCGACAGCAGAGGAGGAAACAGAGCCGAGAAGGAAGCTCCACCAAACCTAACACTTAGAGGCTTCGAAGTTATCGAC GACATCAAGGCCAAGTTGGAGAGACAGTGTCCAGGAATTGTGTCGTGCGCTGACACTTTGGCACTTGCGACTAGAGACGGCGTCGCATTGTCCGGCGGCT CGTCCTATGGTCTCCCTACCGGGAGAAGAGACGGGACTGTTTCGGATGTCAAAGAGGTTCATATTCCGGGGCCCTCAGTCTCGATTTCAGATGCATTAAC CGCGCTCGAACCGCTTAATCTCGGACTAGACGATCTCACCACATTGCTAGGTGCTCACAGCATAGGATTCTGCCACTGTGCATTCTTCATCGGCCGGCTA TACAACTTCAGGGGAAGCGGCCGGCCCGACCCGAACATGGACCCAACCCTTGTCTCTACTCTACGGACCAAATGTCCACGACCCGGTCCGAACGAGTCGT TCAACGTAAGCACCGACCCGAAAGTGTTCATGAATCCGACGAGCGAATCTCCGTTCAGGCTGGACAGCTCGTTCTACGACAATGTGATGAACCAGGAATC GGTTCTCCACCTCGATCAGCAGCTGGCCTTCACTGACATCACGCGTAAAACGGCCTCGCTTTACTCCAGCCGGCCGAAGGTGTTTAGGAAGAGGTTTGCT AAGGCGATGGTTAAGCTTGGGAACGTTGGGGTTTTGACCGGGTCGGCCGGAGAGATTAGGCGTAATTGTAGACGCGTTAATTAA
AA sequence Show only first row Show all	>Lus10018375 pacid=23162118 polypeptide=Lus10018375 locus=Lus10018375.g ID=Lus10018375.BGIv1.0 annot-version=v1.0 MAIALLFLIKFLVAFSTTEASLELHFYRNSCPQAEAIVKSAMKRHFNRDPSVPAGLLRLHFHDCFIRGCDGSVLIDSRGGNRAEKEAPPNLTLRGFEVID DIKAKLERQCPGIVSCADTLALATRDGVALSGGSSYGLPTGRRDGTVSDVKEVHIPGPSVSISDALTALEPLNLGLDDLTTLLGAHSIGFCHCAFFIGRL YNFRGSGRPDPNMDPTLVSTLRTKCPRPGPNESFNVSTDPKVFMNPTSESPFRLDSSFYDNVMNQESVLHLDQQLAFTDITRKTASLYSSRPKVFRKRFA KAMVKLGNVGVLTGSAGEIRRNCRRVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17820			Peroxidase superfamily protein...		Lus10018375 [exp]	0	1
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029639 [exp]	1.0	0.9462
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	7.1	0.9435
AT3G01516			unknown protein		Lus10014544 [exp]	7.5	0.9376
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	14.5	0.9273
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006839 [exp]	17.7	0.9179
AT3G19990			unknown protein		Lus10028680 [exp]	18.0	0.9348
AT3G19990			unknown protein		Lus10028681 [exp]	18.8	0.9342
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	22.0	0.9308
AT5G62130			Per1-like family protein (.1.2...		Lus10031658 [exp]	24.0	0.8992
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	25.5	0.9271

Compare expression of checked genes

Lus10018375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.