Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 446 / 4e-147 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23180 401 / 6e-130 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23130 375 / 5e-120 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23140 373 / 4e-119 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT3G45860 370 / 6e-118 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23270 368 / 1e-117 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23160 381 / 1e-116 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23280 362 / 4e-115 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23220 357 / 2e-112 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G21410 344 / 4e-108 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 415 / 4e-135 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 411 / 1e-133 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 387 / 2e-124 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 366 / 3e-116 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 348 / 1e-109 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 332 / 5e-98 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 301 / 6e-92 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10007635 [exp] 306 / 3e-91 AT4G21410 385 / 6e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018380 [exp] 281 / 4e-87 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G028400 [exp] 463 / 8e-154 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024800 [exp] 444 / 2e-146 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 440 / 5e-145 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 439 / 2e-144 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G025800 [exp] 438 / 4e-144 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 436 / 3e-143 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024900 [exp] 433 / 3e-142 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025650 [exp] 425 / 2e-139 AT4G23180 646 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 410 / 2e-133 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 408 / 2e-132 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10018377 pacid=23162147 polypeptide=Lus10018377 locus=Lus10018377.g ID=Lus10018377.BGIv1.0 annot-version=v1.0 ATGGCTAAATCTCCACGCCTTCAACTCTCCGATGCCCACCTTTCCTTCTCCTGTTGGCTCATACAAGTCATCTTCCTCCTATGCTTCCTCTCCATCCTCA TTTGGAAATGCTTAACCCCACAACCTCCTCGTTACTCCATCACCAACACCTCTTTTAACAACGAGAGGAACCTGACTTCTGTTGCCCTGGACCTCAAAAT CACGAACCCTAACCAGGGCTACCGTGTCTACTACAATCACACGTATGTTAGCCTCGAAGGTACAATCGTGGGAAATGGGTCTGTTTCAGATTTTTATTCG GGTTATGGGGAGACGAGTTTTCAGAGGGTGGCGGTGAATGGTACAAGGAGGGGTACTTTGGATGTTGTAAAGTTGAGGTTGGTCGTTGGGGTTGCGTATA AGGATAAGGTGATTGCAATGAGGACTAGGAGGAAGGAGATGGTGTATGAAGCGAATTTGAGAGTTGGGGTTGATGGAAAGATTGAAGGAGGAAAGGAAGT GGTTATGGTGAGGAATAAGAGAAGGATGAGAAGAGATCAAGGAGATGGAGAAGAAGGGAGTTATTCTTACATCAAGACAAGTAGAAAGTTTGGAACATTC GAGAAGCTTGTCTACAAACAACACACACTTTCAAACAAAACCTGTGATGTCTTCCAAATTGTCTCATCTCCTTGTAATTCTTCTCTCAACCCTCACAATC AACCCAACACAATCATCAACATCAAATCCCATTTACTTACTCATATTTGTCCCAACACCACAACCTTCACTCAAAACTCAACCTTCAACTCAAGCATCCA CCTCCTCCTCTCCTCCTTCTCCTCCGACGCCAACCACACCCTCTTCCATGCCTCTTCCACCCCCTCCGCCTCCGCATACGGCCTCTTCCTATGTCGGGGC GACATCACCCTTCAACAATGCCAAGACTGTATCACCTTCGCCACCTCAGACATCATCACCCGCTGCCCCAACCAAACGACTGCAGTTGTATGGTTCGACC TATGCATGCTCCGCTACTCAAACTGGTCGGTATTCTCGGTTCAACCGGAAACGTTCATGATGTACAACACCAGGAACGTGTCGGAACCAGACCGGTTCAA CAAGCTGGTTTCAGATGTCATGAATCGGGTCATCTCCAGGGCCGCTGGCAGCGGCTCTGGAGATGAGTCGTTCGCGACTGGTTCGGCTGCTTTTTCGGGG TTTCAGACCGTGTATACGCTGGCTCAGTGCACGGATGACTTGTCGAGGGAAGATTGCGACCGGTGCTTGCGAACTTGCATGAGTTTTCTGCCGTCTTGTT GTGATGGGAAGATGGGCGGTAGGGTTCTTCTTCCTAGCTGTAACGTTAGGTATGAAGTTTACCCTTTTTATAATGAAGATGTGGTGGCTCCTGCTCCTGC TCCGGCTCCCTCGCCGGAGATAGATTCTCTTGCTGTGTCACCTTTTCCGGCGGATGGAGAATCAGAAGGAAAAAACGGTGGGATATCATCGGCGATTATA GTGGCCGTCGTAGCTCCGATTGCCGTTTTCGTGTGGACTGTCGGACTAGGAATCTGTTTGGTCATTTGCAATAGAAGATCAAGATCGTCGAACCCAGAGA TTCTGTTCCAAGATTCTCTCCAAGACCCAAATGGTGGGCAGATGATGATGATCATTGACCCTAAAGAAGAAAACGACATCCCAAATGCCGAGTCCCTACA ATTCGACTTGGCTACAATAGAGACCGCCACTAATAGTTTCGACGAGGATAACAAGCTTGGACGAGGTGGTTTTGGCGAGGTCTACATGGGTACATTGTCG ACCGGAGAAGAAATAGCGGTGAAACGACTCTCGAAGGGTTCCGGACAGGGCGAGGAAGAGTTTAAGAACGAGGTGTTGTTGGTCGCCAAGCTTCAACATA GGAACCTGGTGAGGCTCTTAGGGTTTTGCTTGGAAGGCGACGAAAGGATACTCGTGTACGAGTTCGTGCCCAACAAGAGCCTTGATCACTTCCTCTATGT GTCCGTGAATCTGCACGCAGAAGATGAAAGGAAAACCATACTCGATTGGCCATCGCATCACCAAATTGTAGTTGGGATTGCTCGAGGGATTCTGTACCTT CACGAAGATTCTCGGCTTAAAATCATACACCGAGACCTCAAGGCTAGCAACATTCTTTTGGACAGGGATATGAAGGCTAAGATATCGGATTTCGGGATGG CTAGGATCTTTGGAGTTGACCAGACTCAAGCAAATACCAACAGAATCGTCGGCACTTAG
AA sequence Show only first row Show all	>Lus10018377 pacid=23162147 polypeptide=Lus10018377 locus=Lus10018377.g ID=Lus10018377.BGIv1.0 annot-version=v1.0 MAKSPRLQLSDAHLSFSCWLIQVIFLLCFLSILIWKCLTPQPPRYSITNTSFNNERNLTSVALDLKITNPNQGYRVYYNHTYVSLEGTIVGNGSVSDFYS GYGETSFQRVAVNGTRRGTLDVVKLRLVVGVAYKDKVIAMRTRRKEMVYEANLRVGVDGKIEGGKEVVMVRNKRRMRRDQGDGEEGSYSYIKTSRKFGTF EKLVYKQHTLSNKTCDVFQIVSSPCNSSLNPHNQPNTIINIKSHLLTHICPNTTTFTQNSTFNSSIHLLLSSFSSDANHTLFHASSTPSASAYGLFLCRG DITLQQCQDCITFATSDIITRCPNQTTAVVWFDLCMLRYSNWSVFSVQPETFMMYNTRNVSEPDRFNKLVSDVMNRVISRAAGSGSGDESFATGSAAFSG FQTVYTLAQCTDDLSREDCDRCLRTCMSFLPSCCDGKMGGRVLLPSCNVRYEVYPFYNEDVVAPAPAPAPSPEIDSLAVSPFPADGESEGKNGGISSAII VAVVAPIAVFVWTVGLGICLVICNRRSRSSNPEILFQDSLQDPNGGQMMMIIDPKEENDIPNAESLQFDLATIETATNSFDEDNKLGRGGFGEVYMGTLS TGEEIAVKRLSKGSGQGEEEFKNEVLLVAKLQHRNLVRLLGFCLEGDERILVYEFVPNKSLDHFLYVSVNLHAEDERKTILDWPSHHQIVVGIARGILYL HEDSRLKIIHRDLKASNILLDRDMKAKISDFGMARIFGVDQTQANTNRIVGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018377 [exp]	0	1
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	5.7	0.8240
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	7.2	0.8139
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10005420 [exp]	7.4	0.8137
					Lus10006638 [exp]	8.4	0.7888
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	10.7	0.8154
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	13.9	0.8072
AT1G67910			unknown protein		Lus10026701 [exp]	15.7	0.7952
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10024177 [exp]	17.5	0.7905
AT2G46550			unknown protein		Lus10012748 [exp]	17.5	0.8048
AT5G10530			Concanavalin A-like lectin pro...		Lus10014649 [exp]	18.2	0.7873

Compare expression of checked genes

Lus10018377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.