Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 535 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23270 509 / 4e-173 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G38830 508 / 1e-172 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT3G45860 507 / 6e-172 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23140 493 / 1e-166 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23130 483 / 6e-163 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23160 499 / 5e-162 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G00970 473 / 6e-159 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G11530 469 / 4e-157 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G21400 467 / 6e-156 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 753 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10026629 [exp] 725 / 0 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007632 [exp] 721 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007633 [exp] 630 / 0 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007634 [exp] 439 / 3e-146 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10007635 [exp] 447 / 9e-146 AT4G21410 385 / 6e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10015091 [exp] 449 / 1e-141 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 409 / 5e-134 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10018380 [exp] 384 / 3e-127 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026350 [exp] 644 / 0 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 606 / 0 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 604 / 0 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 604 / 0 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029000 [exp] 599 / 0 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024900 [exp] 556 / 0 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 553 / 0 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024800 [exp] 552 / 0 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 551 / 0 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 548 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10018379 pacid=23162140 polypeptide=Lus10018379 locus=Lus10018379.g ID=Lus10018379.BGIv1.0 annot-version=v1.0 ATGAATTCCCTCGTTATTCTACCTCTTCTATTCCTTCTCCTGCCTTCTTACATCACTGGTCAGCCAGACTTCATAGCTTTATCATGCTCCAGCTTCGTAG GAAACTACACATTTGGCAGCACCTACTGGACCAACCTTAACAACCTACTGAACTCTATTGCCGCCGCCAGCTCAACCACCTCGACCACCAAGCCCGGTTT CTTCAACATCTCGTCCGGACAAGGCCCGGGTCGGGTCAATGGAATCGGCCTATGCAGGGGAGATGCAGGGCTTGAAGATTGTCATGGCTGCATCACTGAC GCCACACGTCAGATTCTCGAGGAGTGCCCCGGCAGGAAGGAAGTGGTCGGGTTTTATGATTTGTGTATGATCCGGTACTCGAACCGGTACATCTACGGTG TGCTCGACCAGAAGAGCCCGGTTCTTCCTGTGTGTAACCAGGCATATGTTTCGGACCCTGGCCTGTTCAGCTCAGTCGTGGGGACCCTTTTGAACCGACT CAGGAACAATGCGACAGCTTCTGGTATGAAATTCGCTACCGGAAGGGAGAGGCAACCGTTGTTCGTGGTCTATGGACTGGTTCAGTGCTCTCCTGATTTG TCGAGCCGGCTTTGTGATGACTGCCTTGCCGGAGCTATTTCACATGTCCCGAGCGGTTGTGGAGGGAAAATGGGAGGTAGAATCCTGAAGCCGAGCTGCA ATCTTAGGTTCGAGACAAGTCCATTCTATTCTGAGACAGAAGTATCGACTTCACCTCCGCCACCACCACTCTCGCTGCCGCCACCGCTGGGAGATGGAGG AAGTAAGAACTCGAGCATAGCTACAGATGGAGGAAGTAAGAACTCGAGCAAGCTTGTAGCTATTGTGGTACCGATCGTCGGTGTAGCCGCACTCGGCCTG ATCATCGTTTTCTGTCGTCGAAAACTAACGAGCCCGAGATTTGCAAAGGAGCAGAAAGATAAAGAAGATGATGCAGCGGCCGACGAAATAAACAACGATG GACCGTTGCAATTCGATTTCGAGACAATCAGAGCTGCAACCAATGACTTTGCAGACGAGAGCAAGCTTGGACAAGGAGGGTTTGGAGCCGTTTACAAAGG AACTCTACCAGATGGGCAAGACATAGCTGTGAAGAGGCTGGCGAAAGATTCGGGACAAGGAGACTTGCAATTCAAGAATGAAGTGAAGCTCGTGGCCAAG CTTCAACATCGAAATTTAGTGAGGCTTCTAGGTTTCTGTTTGGAAGGAAGAGAGAGGCTTCTCATCTACGAGTTTGTACCCAACGCTAGTCTCGATCATT TCCTTTTTGATAAAAATAAACGGGTACATTTGGACTGGGAAAGACGGTTCAAGATCATTCGAGGGATTGCTCGAGGACTTCTTTACCTTCATGAAGACTC TAGGCTCCGAATCATTCATCGTGATTTGAAAACTAGCAACATTCTGTTAGATGCGGATATGAACCCAAAGATTGCAGATTTTGGTATGGCTCGATTGTTC CATATGGATGAAACCGAGGGTAGTACCAACAGAATTGTCGGCACCTATGGCTATATGGCTCCAGAGTATGCAATGCACGGCGAGTTCTCAGTGAAGTCTG ACGTGTTTAGTTTTGGAGTACTTCTATTGGAGATTGTATGTGGCCAAAAGAACAACCATTTCCGTAATGAATCGAGTAGAGGGGACCTACTGAGTTATGT ATGGAGAAAATGGAATAGCGGGGCGTATTCAAATGTCATGGATCCTGCACTGGGGAGCGCTTCAGGGAACGAGATAGCAAGATGCATCAATATCGGGCTG TTGTGTGTACAAGAGAATGCGAATGACAGGCCGACCATAGCTTATGTTCTTCTGATGTTAACAACCAGTTCACTCGATTTGCAGTCACCGCTGAAGCCAG CGTTCTTCGTGCACACTGATGCTGGAAAATGGAGCCATCAAGGGCTGAATATGGCGGAGAGTGACCAATCTAGTGGTCAGTCATCATCACTAGTCTGGTC GACTAACGAGGCTTCTGTTACCGACTTATATCCTAGATGA
AA sequence Show only first row Show all	>Lus10018379 pacid=23162140 polypeptide=Lus10018379 locus=Lus10018379.g ID=Lus10018379.BGIv1.0 annot-version=v1.0 MNSLVILPLLFLLLPSYITGQPDFIALSCSSFVGNYTFGSTYWTNLNNLLNSIAAASSTTSTTKPGFFNISSGQGPGRVNGIGLCRGDAGLEDCHGCITD ATRQILEECPGRKEVVGFYDLCMIRYSNRYIYGVLDQKSPVLPVCNQAYVSDPGLFSSVVGTLLNRLRNNATASGMKFATGRERQPLFVVYGLVQCSPDL SSRLCDDCLAGAISHVPSGCGGKMGGRILKPSCNLRFETSPFYSETEVSTSPPPPPLSLPPPLGDGGSKNSSIATDGGSKNSSKLVAIVVPIVGVAALGL IIVFCRRKLTSPRFAKEQKDKEDDAAADEINNDGPLQFDFETIRAATNDFADESKLGQGGFGAVYKGTLPDGQDIAVKRLAKDSGQGDLQFKNEVKLVAK LQHRNLVRLLGFCLEGRERLLIYEFVPNASLDHFLFDKNKRVHLDWERRFKIIRGIARGLLYLHEDSRLRIIHRDLKTSNILLDADMNPKIADFGMARLF HMDETEGSTNRIVGTYGYMAPEYAMHGEFSVKSDVFSFGVLLLEIVCGQKNNHFRNESSRGDLLSYVWRKWNSGAYSNVMDPALGSASGNEIARCINIGL LCVQENANDRPTIAYVLLMLTTSSLDLQSPLKPAFFVHTDAGKWSHQGLNMAESDQSSGQSSSLVWSTNEASVTDLYPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018379 [exp]	0	1
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10041210 [exp]	1.4	0.9664
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	1.4	0.9729
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10027580 [exp]	2.2	0.9574
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026905 [exp]	2.4	0.9615
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	4.0	0.9588
					Lus10041664 [exp]	4.0	0.9355
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	7.0	0.9362
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10011039 [exp]	7.3	0.9269
AT1G31710			Copper amine oxidase family pr...		Lus10010542 [exp]	7.7	0.8957
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	9.2	0.9443

Compare expression of checked genes

Lus10018379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.