Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 307 / 7e-98 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23180 303 / 2e-96 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G38830 295 / 1e-93 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G21410 295 / 3e-93 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G21230 283 / 3e-89 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G23280 283 / 8e-89 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT3G45860 277 / 2e-86 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23160 282 / 7e-85 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23270 269 / 1e-83 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23150 268 / 6e-83 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 565 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 563 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 438 / 1e-148 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 428 / 1e-144 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007634 [exp] 420 / 2e-142 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10007633 [exp] 407 / 1e-136 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007635 [exp] 379 / 3e-123 AT4G21410 385 / 6e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018377 [exp] 308 / 2e-97 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031582 [exp] 248 / 2e-75 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026350 [exp] 384 / 1e-127 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 349 / 7e-114 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 348 / 1e-113 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 346 / 8e-113 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029000 [exp] 337 / 2e-109 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025200 [exp] 321 / 2e-103 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028600 [exp] 321 / 3e-103 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025425 [exp] 316 / 1e-101 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026100 [exp] 314 / 2e-100 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026200 [exp] 311 / 6e-100 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10018380 pacid=23162229 polypeptide=Lus10018380 locus=Lus10018380.g ID=Lus10018380.BGIv1.0 annot-version=v1.0 ATGAATTCCTTCCTTCTTCCTCTTCTCCTAATCCTTCTAACTTATCACGCAACTGCCCAGCCAAACCCACTCTCCCAAAGATGCCCCATCGACGTTGGAA ACTACACTGCCGACAGCCCCTACGCAAGAAACCTCAACACCCTCCTCAACTCAATCGCCGCCGACAACAACAACCGATCCACTCCCGGCTTCTACAACTC CTCATCTGGTCAATCTCCAGACCAAGTCAACGCGATCGGGCTATGCAGAGGGGACGTCACCGCAAATGAATGCCGCGTATGCATAAGGAACGCCACAGGC AGGATTGTTCAGGCCTGCCCGAACCAGAAGGAGGCTGTTATATGGTACGATCCGTGTATGCTCAGGTTCTCGAATCGCTCCATTTTCGGTTCAGTACAAT GGAGCCCGATTCATGCCCGGTGTAACCCTGTCAATGCTTCCGACCTGAACCCGTTCAACGAAGCGCTGGAGACGCTCATGACCCAGCAACGAGCCGCCGC CTCGAGGTCGGTTGAGAGATTTGCGACGGGGAAGTTGAGGCAGGGATTTCGGACGATCTACGGACTCGTGCAATGCTCTCAGGATCTGTCTAGCCAGCTC TGCGACGACTGCCTTGAAGAAGCCATTGGGCAGATCCCGAATTTCTGCGGAGGGAAAGTAGGAGGTCGATTTCTAAATCCCAGCTGTAATATCAGGTTCG AGATTTATCGATTTTTTACGGAAACGGAAGCGCCACCGCCTGCGCTGTCAATACTGCCGGCGCCACCTCCTCCATCTCCGCAGGGAAGTGGAGGAACTAA AAATACGAGCATGATTGTAGCCATTGTGATTCCAATCGTCGTGCTCGGATTTATTTCCTTCTTGTTCTGCTACCGCCGCAAACTGAAGATCAGGTCGATA GTGGCAATGCAGAGGAACAGTCATTATGGCACGACGGCCGATGAAATTAGCAACGAAGTATCATTGCAATTTGATTTCGACACCGTTAGAGCTGCCACGA ACGGTTTTGCGGAAGAAAGCAAGCTTGGAGAAGGCGGGTTTGGAGCGGTTTACAAGGGAACTCTGTCGAATGGGAAAGACGTGGCGGTGAAGAGGCTCGA TAAAGATTCCGGACAGGGAGATTTGGAGTTCAAGAACGAGGTAAAGCTGGTGGCCAAGCTTCAACATCGAAATTTAGTGAGGCTTCTTGGTTTCTGCTTG GAAGGAAGGGAGAGGCTTCTCATCTACGAGTTCGTGCCCAACACTAGCCTTGATCATTTCCTTTTTGGTACGAAAAAACAACCCGATTGA
AA sequence Show only first row Show all	>Lus10018380 pacid=23162229 polypeptide=Lus10018380 locus=Lus10018380.g ID=Lus10018380.BGIv1.0 annot-version=v1.0 MNSFLLPLLLILLTYHATAQPNPLSQRCPIDVGNYTADSPYARNLNTLLNSIAADNNNRSTPGFYNSSSGQSPDQVNAIGLCRGDVTANECRVCIRNATG RIVQACPNQKEAVIWYDPCMLRFSNRSIFGSVQWSPIHARCNPVNASDLNPFNEALETLMTQQRAAASRSVERFATGKLRQGFRTIYGLVQCSQDLSSQL CDDCLEEAIGQIPNFCGGKVGGRFLNPSCNIRFEIYRFFTETEAPPPALSILPAPPPPSPQGSGGTKNTSMIVAIVIPIVVLGFISFLFCYRRKLKIRSI VAMQRNSHYGTTADEISNEVSLQFDFDTVRAATNGFAEESKLGEGGFGAVYKGTLSNGKDVAVKRLDKDSGQGDLEFKNEVKLVAKLQHRNLVRLLGFCL EGRERLLIYEFVPNTSLDHFLFGTKKQPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018380 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018381 [exp]	1.0	0.9227
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10029152 [exp]	3.5	0.8431
AT4G12010			Disease resistance protein (TI...		Lus10015350 [exp]	4.5	0.8106
AT1G77810			Galactosyltransferase family p...		Lus10024750 [exp]	5.1	0.7462
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	6.2	0.7714
AT5G05190			Protein of unknown function (D...		Lus10034250 [exp]	7.7	0.7771
AT1G11300			protein serine/threonine kinas...		Lus10013245 [exp]	8.7	0.8416
AT3G54040			PAR1 protein (.1)		Lus10017196 [exp]	9.0	0.7778
					Lus10029851 [exp]	11.6	0.8020
AT5G48290			Heavy metal transport/detoxifi...		Lus10025180 [exp]	17.0	0.7285

Compare expression of checked genes

Lus10018380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.