Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 283 / 5e-91 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G00960 272 / 2e-90 Protein kinase superfamily protein (.1) AT4G23140 276 / 1e-88 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23280 275 / 3e-88 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G21410 274 / 1e-87 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G38830 274 / 1e-87 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23150 273 / 3e-87 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G05200 270 / 4e-86 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23230 265 / 5e-86 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT3G45860 269 / 7e-86 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 455 / 5e-158 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 455 / 7e-158 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007633 [exp] 366 / 3e-123 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 323 / 1e-106 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 303 / 2e-98 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018405 [exp] 249 / 8e-77 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10007602 [exp] 247 / 2e-76 AT1G65800 788 / 0.0 receptor kinase 2 (.1) Lus10007603 [exp] 247 / 4e-76 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10031579 [exp] 243 / 5e-76 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026350 [exp] 344 / 6e-115 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 305 / 9e-100 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 305 / 1e-99 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 305 / 2e-99 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029000 [exp] 303 / 1e-98 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024632 [exp] 286 / 8e-96 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 292 / 2e-94 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024900 [exp] 290 / 1e-93 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 290 / 1e-93 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024800 [exp] 287 / 8e-93 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018381 pacid=23162145 polypeptide=Lus10018381 locus=Lus10018381.g ID=Lus10018381.BGIv1.0 annot-version=v1.0 ATGTCTGCTCTCCTGAGTTGGATTTGTTCGATTTCGGCTTTATGGACTGATATACTTGGATTGTTTGTAAATCGAGAGAAACGGGAATGTTTGGATTGGG AGAGAAGGTACAAGATCATTTCAGGCATTGTTCGAGGACTTGTTTACCTTCACGAGGACTCTAGGCTTAGGATCATTCACCGTGATCTTAAAGCAAGCAA CATCCTTTTGGATACGGATATGAGCCCTAAGATTGCAGATTTTGGGATGGCTAGACTGTTTGATATCGATGAGACGCACTGCAATACTAGCAGGATCGTC GGAACTTATGGCTATATGGCGCCGGAATATGCAATGCACGGTCAGTTCTCGATAAAAACAGACGTATTTAGTTTTGGTGTGCTTGTTTTAGAGATTTTGA GCGGCCAGAAAAACAATTATGTCACCCATGGCTCTAGCACAGAGGATCTTTTGAGTTATGCATGGAAGAACTGGAAGGCCGGGACGTACTCACAAGTGAT AGACCCGTTCCTCGGTAACGTATCGGGGAATGAGATAACCAGATGCATCCATATCGCGTTGTTGTGTGTGCAAGAGAATGTTATCGACAGGCCGACCATG ACTTCTGTTGCACTTATGTTAACTAGCAATTCGATGAGTCTGCAGCTGCCTTCGAAGCCGGCATTCTTCATGCATACCAACACCACCGACCACTCGTGGG GCTCCAACAACACCTCTAGGGAGGTCACCGGTTCTTCTCCTCCGATCGAAGCACATCTTTTTTCGAGAAATGACATCTCCATTACTGAACTTTACCCTCG CTAA
AA sequence Show only first row Show all	>Lus10018381 pacid=23162145 polypeptide=Lus10018381 locus=Lus10018381.g ID=Lus10018381.BGIv1.0 annot-version=v1.0 MSALLSWICSISALWTDILGLFVNREKRECLDWERRYKIISGIVRGLVYLHEDSRLRIIHRDLKASNILLDTDMSPKIADFGMARLFDIDETHCNTSRIV GTYGYMAPEYAMHGQFSIKTDVFSFGVLVLEILSGQKNNYVTHGSSTEDLLSYAWKNWKAGTYSQVIDPFLGNVSGNEITRCIHIALLCVQENVIDRPTM TSVALMLTSNSMSLQLPSKPAFFMHTNTTDHSWGSNNTSREVTGSSPPIEAHLFSRNDISITELYPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018381 [exp]	0	1
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018380 [exp]	1.0	0.9227
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10029152 [exp]	4.5	0.8265
AT3G54040			PAR1 protein (.1)		Lus10017196 [exp]	4.9	0.7953
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10037212 [exp]	8.7	0.7519
AT5G05190			Protein of unknown function (D...		Lus10034250 [exp]	10.8	0.7530
AT5G48290			Heavy metal transport/detoxifi...		Lus10025180 [exp]	11.0	0.7475
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	11.5	0.7360
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	11.6	0.7668
AT1G77810			Galactosyltransferase family p...		Lus10024750 [exp]	12.6	0.7173
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	13.2	0.7821

Compare expression of checked genes

Lus10018381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.