Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 596 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G21410 591 / 0 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G05200 587 / 0 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G38830 577 / 0 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23160 564 / 0 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23280 555 / 0 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23140 552 / 0 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23190 545 / 0 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G23150 533 / 0 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G00970 531 / 0 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007632 [exp] 1105 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007633 [exp] 837 / 0 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 812 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 765 / 0 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007634 [exp] 646 / 0 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10007635 [exp] 634 / 0 AT4G21410 385 / 6e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018380 [exp] 546 / 0 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018381 [exp] 455 / 1e-157 AT4G23180 283 / 3e-91 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015091 [exp] 491 / 2e-157 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026350 [exp] 755 / 0 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 706 / 0 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 697 / 0 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 695 / 0 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029000 [exp] 689 / 0 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025200 [exp] 647 / 0 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 639 / 0 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 620 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G028600 [exp] 620 / 0 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025425 [exp] 616 / 0 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10018382 pacid=23162220 polypeptide=Lus10018382 locus=Lus10018382.g ID=Lus10018382.BGIv1.0 annot-version=v1.0 ATGAATCTCCTCTGTCTTCTCCTTCCCCTCCTCCTCCTCCTACCTTATTACGCAACTTCTCAGCCATCCTTCATCTTACGATCATGCTCCAACGACGTCG GAAACTACACCGCCGGAAGCCCCTACGCAAGAAACCTCAACAGCCTCCTCACCTCAATCACCGCCGACAACAACGGAGCCAATTATGGCTTTTTTAAATC GTCATCGGGTCAACCCCCTAACCGAGTCAACGCAATCGGGCTATGCAGAGGCGACGTAAAGGGAGACGACTGCCGCGAGTGCATAACCAACGCCACGAGC CGGATCCTCCAGGACTGTCCGAACCAAAAACAGGCGGTCGGGTGGTACGACCCGTGCATGATTCGGTTCTCGAACCGGTCCATCTTCGGCGTACGCGAAT CGGGTCCCACTTTCTACATGTGGAACTTGAACAATGCGTCAGACCCGAGCACCTTCACCGATGCGCTGGAGAAGCTCATGACCCGGCTGCGATCCGCCGC CTCGAGTTCTGTCGAGAGATTCGCAACGGGGATGCAGAGGCAGGGGTTTCAGACGGTCTACGGACTACTGCAGTGCTCGCCGGATCTATCCAGCAGTCTC TGCAACGACTGCCTTGAAGGAGCTGTCTCGCAGATCCCGGATTGCTGCGGAGGGAAAATTGGAGGTCGAGTTATAAGCCCGAGTTGTAATTTGAGGTTCG AGACTTCTCGATTTTATGCGGAGACGGCAGCACCGCCTCCTGCGCCCACAATATCGCCACCGCCTCCTCCGTCTACTCTGCCTCCGGGAAATGGAGGAAC TAAGGGTACAGGCAGGACTATAGCTATTGTGGTGCCGATCGTCGGAGTTTCAGTGCTCGGATTTATGGTCATCTTTTTCTGCTGCCATCGCAAACTGAAG AAGTCGAGAGTGGCAACACAGAGGAATAGTCATTATGGCACGACGGCGGATGAAATTAGCAACGAAGGATCATTGCAATTCGATTTCGAGACCGTTAGAA CTGCCACGAACGATTTTGCGGAAGAAAGCAAGCTCGGAGAAGGCGGGTTTGGAGCGGTTTACAAGGGAACTCTGTCGAATGGGAAAGACGTGGCGGTGAA GAGGCTCGATAAAGATTCCGGACAGGGAAATTTGGAGTTCAAGAACGAGGTAAAGTTGGTGGCCAAGCTTCAACATCGAAATTTAGTGAGGCTTCTTGGT TTCTGCTTGGAAGGAAGGGAGAGGCTTCTCATCTATGAGTTCGTGCCCAACACTAGCCTTGATCATTTCCTTTTCGATCGAGAGAAGCGGGAATGTTTGG ATTGGGAGAGAAGATACAAGATCATTGGAGGCATTGCGCGAGGACTTGTCTACCTTCACGAGGACTCTAGGCTTCGGATCATTCATCGTGATCTTAAAGC TAGCAACATTCTTTTGGATGAGGATATGAGCCCTAAAATTGCTGATTTCGGGATGGCTAGATTGTTTGACATCGATGAGACCCAGGGCAATACTAGCAGG ATCGTCGGAACTTATGGTTATATGGCGCCGGAGTATGCAATGCACGGTCAGTTCTCAATAAAATCAGACGTATTTAGTTTCGGTGTGCTTGTTTTAGAGA TTGTGAGCGGTCAGAAGAACAACTGTTTCATCCATGGCTCGAGCACAGAGGACCTTTTGAGTTATGCATGGAAGAACTGGAAGTCCGGGACGTACTCACA AGTTATAGACCCGTTACTCGGTAACATTTCGGGGAACGAGATAGTCAGATGCATCCACATCGCGTTGCTATGCGTGCAAGAGAATGTCAACGACAGGCCT ACCATGACTTCTGTTGCACTGATGTTAACCAGCAATTCGTTGAGTCTGCAGCTGCCTTCGAAGCCGGCATTCTTCATGCATACCAACACCACCGACGACT CGTGGGGCTACAGCAGCACTTCGAGGGAGGTCACCGGCTCTTCTCCTTCAATTGAAGCTCTTCCTCAGTCGAAAAATGACGTCTCCATCACTGAACTTTA CCCTCGCTAA
AA sequence Show only first row Show all	>Lus10018382 pacid=23162220 polypeptide=Lus10018382 locus=Lus10018382.g ID=Lus10018382.BGIv1.0 annot-version=v1.0 MNLLCLLLPLLLLLPYYATSQPSFILRSCSNDVGNYTAGSPYARNLNSLLTSITADNNGANYGFFKSSSGQPPNRVNAIGLCRGDVKGDDCRECITNATS RILQDCPNQKQAVGWYDPCMIRFSNRSIFGVRESGPTFYMWNLNNASDPSTFTDALEKLMTRLRSAASSSVERFATGMQRQGFQTVYGLLQCSPDLSSSL CNDCLEGAVSQIPDCCGGKIGGRVISPSCNLRFETSRFYAETAAPPPAPTISPPPPPSTLPPGNGGTKGTGRTIAIVVPIVGVSVLGFMVIFFCCHRKLK KSRVATQRNSHYGTTADEISNEGSLQFDFETVRTATNDFAEESKLGEGGFGAVYKGTLSNGKDVAVKRLDKDSGQGNLEFKNEVKLVAKLQHRNLVRLLG FCLEGRERLLIYEFVPNTSLDHFLFDREKRECLDWERRYKIIGGIARGLVYLHEDSRLRIIHRDLKASNILLDEDMSPKIADFGMARLFDIDETQGNTSR IVGTYGYMAPEYAMHGQFSIKSDVFSFGVLVLEIVSGQKNNCFIHGSSTEDLLSYAWKNWKSGTYSQVIDPLLGNISGNEIVRCIHIALLCVQENVNDRP TMTSVALMLTSNSLSLQLPSKPAFFMHTNTTDDSWGYSSTSREVTGSSPSIEALPQSKNDVSITELYPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Lus10018382 [exp]	0	1
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038524 [exp]	11.6	0.9033
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10019136 [exp]	13.1	0.8923
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10002945 [exp]	23.6	0.8496
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030828 [exp]	28.4	0.8858
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023282 [exp]	33.6	0.8877
					Lus10000811 [exp]	36.7	0.8110
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024061 [exp]	37.3	0.8647
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10014539 [exp]	44.0	0.7943
					Lus10020461 [exp]	47.0	0.8353
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10033955 [exp]	68.9	0.8554

Compare expression of checked genes

Lus10018382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.