Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05180 236 / 3e-79 PSII-Q, PSBQ, PSBQ-2 photosystem II subunit Q-2 (.1) AT4G21280 228 / 4e-76 PSBQ, PSBQA, PSBQ-1 PHOTOSYSTEM II SUBUNIT Q-1, photosystem II subunit QA (.1.2) AT3G01440 62 / 8e-12 PnsL3, PQL2, PQL1 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) AT1G14150 61 / 3e-11 PnsL2, PQL2, PQL1 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2) AT2G01918 55 / 3e-09 PQL3 PsbQ-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007627 [exp] 345 / 6e-122 AT4G05180 281 / 7e-97 photosystem II subunit Q-2 (.1) Lus10020071 [exp] 278 / 1e-95 AT4G05180 282 / 2e-97 photosystem II subunit Q-2 (.1) Lus10006751 [exp] 265 / 4e-87 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1) Lus10002286 [exp] 56 / 9e-10 AT2G01918 90 / 2e-23 PsbQ-like 3 (.1) Lus10037159 [exp] 56 / 1e-09 AT1G14150 177 / 6e-57 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2) Lus10004054 [exp] 54 / 3e-09 AT2G01918 89 / 6e-23 PsbQ-like 3 (.1) Lus10036622 [exp] 52 / 7e-08 AT3G01440 237 / 2e-79 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Lus10035839 [exp] 49 / 6e-07 AT3G01440 232 / 2e-77 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G031300 [exp] 240 / 1e-80 AT4G05180 261 / 2e-88 photosystem II subunit Q-2 (.1) Potri.004G031500 [exp] 236 / 9e-79 AT4G05180 269 / 1e-91 photosystem II subunit Q-2 (.1) Potri.010G166800 [exp] 64 / 2e-12 AT1G14150 195 / 9e-64 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2) Potri.001G416400 [exp] 60 / 6e-11 AT3G01440 230 / 2e-76 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Potri.017G129700 [exp] 57 / 7e-10 AT2G01918 100 / 7e-27 PsbQ-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05757 [flax] [poplar] PsbQ Oxygen evolving enhancer protein 3 (PsbQ)
Representative CDS sequence Show only first row Show all	>Lus10018385 pacid=23162165 polypeptide=Lus10018385 locus=Lus10018385.g ID=Lus10018385.BGIv1.0 annot-version=v1.0 ATGGCTCAGGCAATGGCTTCGATGGGCGGATCTACCAAGCTCAACATCTCGACCGGAACTACTACCCGCGTCTCGTCCTCCACCCGGGCTAGCTTCGCAG TTCGCGCTCAGGCTGCTGAGCCCGAAACGAGCCGGCGTGGCATGATTGGACTACTGGCCGTTGGTTTGGCATCCGGGTCTTTCGTTCAGGCTGTTCTCGC CGATGCTAGAACGACCCAAATCGGCGGTCCGCCGCCTCTCTCCGGCGGACTCCCGGGGACGCTGAACTCCGACGAGGCGAGGGATCTAGACCTGCCGCTG AAGGAAAGGTTCTACCTGCAGCCACTGACGCCGGAGCAGGCGGTTGCGAGGGCGAAAGTGTCGGCGAAGGAGATAGTGAGCGTGAAAGATTTCATCGACA AGAAGGCGTGGCCGTACGTTCAGAACGATCTAAGGCTGAGGGCATCTTACCTTCGTTACGATCTCAAGACGGTGATCTCTTCCAAGCCTAAGCCGGAGAA GCAAGCTCTCACTGATCTCACCGGCAAGCTCTTCCAGAGCATCAACAGCCTGGACTATGCAGCCAAGATCAAGAGCAGTGACCAGGCACAGAAGTACTAC GCCGAGACCGTATCGAATTTGAATGATGTTCTTGCTAAGCTTGGTTAA
AA sequence Show only first row Show all	>Lus10018385 pacid=23162165 polypeptide=Lus10018385 locus=Lus10018385.g ID=Lus10018385.BGIv1.0 annot-version=v1.0 MAQAMASMGGSTKLNISTGTTTRVSSSTRASFAVRAQAAEPETSRRGMIGLLAVGLASGSFVQAVLADARTTQIGGPPPLSGGLPGTLNSDEARDLDLPL KERFYLQPLTPEQAVARAKVSAKEIVSVKDFIDKKAWPYVQNDLRLRASYLRYDLKTVISSKPKPEKQALTDLTGKLFQSINSLDYAAKIKSSDQAQKYY AETVSNLNDVLAKLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10018385 [exp]	0	1
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10007627 [exp]	1.0	0.9926
AT4G12800		PSAL	photosystem I subunit l (.1)		Lus10002143 [exp]	2.8	0.9838
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10026205 [exp]	3.5	0.9774
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10038954 [exp]	4.5	0.9790
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10012086 [exp]	4.6	0.9816
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10011913 [exp]	5.7	0.9815
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10022846 [exp]	5.7	0.9745
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10005199 [exp]	6.2	0.9658
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10030191 [exp]	6.3	0.9688
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10008747 [exp]	6.7	0.9697

Compare expression of checked genes

Lus10018385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.