Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21320 418 / 8e-149 HSA32 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007625 [exp] 474 / 6e-165 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G031600 [exp] 463 / 2e-166 AT4G21320 414 / 3e-147 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1) Potri.004G031100 [exp] 176 / 2e-55 AT4G21320 173 / 9e-55 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF02679 [flax] [poplar] ComA (2R)-phospho-3-sulfolactate synthase (ComA)
Representative CDS sequence Show only first row Show all	>Lus10018387 pacid=23162148 polypeptide=Lus10018387 locus=Lus10018387.g ID=Lus10018387.BGIv1.0 annot-version=v1.0 ATGTCGTCGGTGTACTATCACTGGAAGAGCTTCGACGACGACAACGACGACGATCGGCCGGAGAAGCCTCGACGCTATGGCGTAACCGAGATGAGAGGTC CTCAGCACAGCTTCCTCAGCCAGAACATGCTCCAGGATATTTTTGAATCCATTGGACAGTTTGTCGATGGATTGAAGTTCTCCGGAGGTTCACACAGCTT GATGCCGAAGTCGTTTCTTAAAGAAGTGATCGACATGGCTCACCGGCATGATGTGTACGTCAGTACTGGAGATTGGGCTGAACATCTTCTTCGCAAAGGT CCCTCTGCTTTCAAGGACTATGTAGAGGAGTGTAAGAGCATGGGATTTGATACGATTGAGCTGAATATGGAATCACTTGGAGTCCCTGAGGATACCCTCT TGAGATACGTGCGTCTAATCAAGAGTGGTGGACTGAAAGCTAAACCTCAGTTCGCCATCATGTTTAACAAGTCCGATATTCCAGTCCGTGGAAACCGGGC ATTTGGTGCTTATGTGCCACCGGCTCCTCCTCGGTCATCTGAAGTAGTTGAAGATGTTGATCTTCTGATTAGAAGGGCTGAGAGATGCTTAGAAGCTGGG GCAGATATGATCATGATTGATGCTGATGATCTCTGCAAGGATGCTGATCGGCTGAGGGCGGACATAGTTGCTAAGATCATTGGGCGACTGGGTGTCGAGA AGACCATGTTCGAAGCATCGAATCCCAGAACTTCTGAGTGGTTTGTCAAGCGTTATGGTCCAAAGGTTAACCTTTTCGTCGATCATTCGCAAGTAATCGG GCTAGAGTGCCTCCGATCTCGCTCCAACAAGGATCAAGGTTCTGCTTTTAGTCCCCAGTATTTTCTGCTTTGA
AA sequence Show only first row Show all	>Lus10018387 pacid=23162148 polypeptide=Lus10018387 locus=Lus10018387.g ID=Lus10018387.BGIv1.0 annot-version=v1.0 MSSVYYHWKSFDDDNDDDRPEKPRRYGVTEMRGPQHSFLSQNMLQDIFESIGQFVDGLKFSGGSHSLMPKSFLKEVIDMAHRHDVYVSTGDWAEHLLRKG PSAFKDYVEECKSMGFDTIELNMESLGVPEDTLLRYVRLIKSGGLKAKPQFAIMFNKSDIPVRGNRAFGAYVPPAPPRSSEVVEDVDLLIRRAERCLEAG ADMIMIDADDLCKDADRLRADIVAKIIGRLGVEKTMFEASNPRTSEWFVKRYGPKVNLFVDHSQVIGLECLRSRSNKDQGSAFSPQYFLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10018387 [exp]	0	1
AT1G30070			SGS domain-containing protein ...		Lus10038500 [exp]	1.7	0.9599
AT4G02450			HSP20-like chaperones superfam...		Lus10000340 [exp]	2.4	0.9438
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	3.5	0.9551
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Lus10041018 [exp]	4.2	0.9342
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10005953 [exp]	4.5	0.9445
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	6.5	0.9427
AT5G35320			unknown protein		Lus10011963 [exp]	6.6	0.9297
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10008448 [exp]	6.9	0.8994
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	7.1	0.9471
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	7.7	0.9466

Compare expression of checked genes

Lus10018387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.