Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27240 282 / 1e-91 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G54630 282 / 4e-91 C2H2ZnF zinc finger protein-related (.1) AT1G11490 182 / 1e-53 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G75710 136 / 8e-36 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G29660 106 / 2e-25 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G62520 102 / 1e-24 unknown protein AT4G22560 99 / 2e-23 unknown protein AT4G12450 90 / 4e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007625 [exp] 601 / 0 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1) Lus10018389 [exp] 274 / 2e-92 AT5G54630 166 / 4e-50 zinc finger protein-related (.1) Lus10043080 [exp] 247 / 7e-78 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10024333 [exp] 156 / 6e-45 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10033148 [exp] 146 / 1e-39 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 144 / 9e-39 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10025632 [exp] 142 / 4e-38 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10028083 [exp] 137 / 3e-36 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10018219 [exp] 110 / 9e-27 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030800 [exp] 310 / 1e-102 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.001G415600 [exp] 298 / 1e-97 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.011G131300 [exp] 259 / 8e-83 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.005G173400 [exp] 165 / 1e-46 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.005G238300 [exp] 158 / 3e-44 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 149 / 1e-40 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.002G023200 [exp] 141 / 4e-38 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.001G249900 [exp] 127 / 6e-33 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.009G043900 [exp] 124 / 1e-31 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.001G121600 [exp] 98 / 4e-23 AT4G22560 258 / 5e-86 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018388 pacid=23162218 polypeptide=Lus10018388 locus=Lus10018388.g ID=Lus10018388.BGIv1.0 annot-version=v1.0 ATGAGCACTAGAGAAGGCGGGAAACCCAGAGAGACATGTACTGTCTGGAATTCTCTAAAGAAATCGTTCCAGACCTGCAGGCCGGAACCCATGGCTGCAG CCGAACCGAGGCCGAAGAGGAACACATGCAGCTCGGCCTGTTCGAGATCGTTGTCGAATCTCCGGGACGTCATCCACGGAAGCAAACGCCACACTACGGA GTGCCGTGGTGATGATGATGATAATAAGCCTCCGCCATCTTCTTACAGTCCGAGATCTCTGGGGAGCAGTGATTTCCTCAACGTTGTCTCCCATGATGTA GTGCTGAGTGACTCCACCTGTGAGCTGAAAATTACAGGCAAGGTCAGTCCAGCTACTCTCATTTCCGGCATCAAGTTGGGAAACGAAGGAGGAGGGTTCG ATCTGTCTCCTCCTCGTAGGAAATCGGTTAATGGCGTTGGAAATGAGAAGCCTTCCAGATTCAGGACAGTTCCTGATGTAGAATCTGATGGATCATCGCC TCTTCAATGCAAGAAATGTAGTGTGCAGTTTAAAAACGTCGAAGATGTTGAAGAGCATCATGTTTCGGAACATGCCGTTACTGAGCTAGGAGAAGGCGAC TCATCCAGGCGAGTAGTGGAAATCATCTGCAGGACAAATGACACATCATTAAGGATCGACCGAGTTCTGAAGGTGAACAACACGAACGCCACTCTCTCCC GATTCGAGGAGCATCGGGAAACGGTCAGGACAAACGCCACAAAGCTCCCCACAAAGCACCCGCGCTGCCTCGCAGATGGGAACGAGCTGTTGAGGTTCCA TGGCACGAATGTATCGTGTCCCCTCGGTTCGTCGTCCTCGTTCGTCCTCTGCACAATGGAGGATTGCGGAGTATGCCTGATTCTACGAAACGGGTTCTCG AATCGAGAGCTGACGGGAAATGTAGGCGTATTCACCGCTTCAACGAGTAAGAAGGCAATTGAGAAAACTTCTTCGGAAGGTGGTGGAAGGAATGCTTTGG TGCTGTGTAGAGTAATAGCAGGGAGAGTTCATAAGCCGGTTGAGAACATTCAAGAGGTTGTTAACCAGTCCGGGTTCGACTCACTGGCCGGGAAATTCGG CCAGCCTTCGAGTATCGAGGAGCTCTTCCTGCTCGACCCGAAAGCTCTCCTCCCTTGCTTTGTGGTGATTTGTAGACTGTGA
AA sequence Show only first row Show all	>Lus10018388 pacid=23162218 polypeptide=Lus10018388 locus=Lus10018388.g ID=Lus10018388.BGIv1.0 annot-version=v1.0 MSTREGGKPRETCTVWNSLKKSFQTCRPEPMAAAEPRPKRNTCSSACSRSLSNLRDVIHGSKRHTTECRGDDDDNKPPPSSYSPRSLGSSDFLNVVSHDV VLSDSTCELKITGKVSPATLISGIKLGNEGGGFDLSPPRRKSVNGVGNEKPSRFRTVPDVESDGSSPLQCKKCSVQFKNVEDVEEHHVSEHAVTELGEGD SSRRVVEIICRTNDTSLRIDRVLKVNNTNATLSRFEEHRETVRTNATKLPTKHPRCLADGNELLRFHGTNVSCPLGSSSSFVLCTMEDCGVCLILRNGFS NRELTGNVGVFTASTSKKAIEKTSSEGGGRNALVLCRVIAGRVHKPVENIQEVVNQSGFDSLAGKFGQPSSIEELFLLDPKALLPCFVVICRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10018388 [exp]	0	1
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10018389 [exp]	1.0	0.9464
AT5G44785		OSB3	organellar single-stranded DNA...		Lus10002722 [exp]	3.9	0.8563
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10027649 [exp]	12.2	0.8633
AT5G08650			Small GTP-binding protein (.1)		Lus10035968 [exp]	12.3	0.8746
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	13.6	0.8852
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10016122 [exp]	14.4	0.8427
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10016009 [exp]	15.4	0.8566
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10010273 [exp]	16.9	0.8318
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	20.2	0.8807
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	21.2	0.8685

Compare expression of checked genes

Lus10018388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.